Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15947 | 3' | -49.5 | NC_004065.1 | + | 80384 | 0.68 | 0.998291 |
Target: 5'- -----gCGCGUgCAGGGCCUG-CCGa -3' miRNA: 3'- cuauuaGUGCAgGUUCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 186935 | 0.67 | 0.998576 |
Target: 5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3' miRNA: 3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 52049 | 0.67 | 0.99882 |
Target: 5'- ------aGCGgUgAAGACCUGUCUGCa -3' miRNA: 3'- cuauuagUGCaGgUUCUGGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 150871 | 0.67 | 0.999027 |
Target: 5'- -uUGAUCAUggagaagagGUCCAGcGACgaGUCCGUc -3' miRNA: 3'- cuAUUAGUG---------CAGGUU-CUGgaCAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 194769 | 0.67 | 0.999027 |
Target: 5'- ----cUCGCGccgucCCGAGACCggGUCgCGCa -3' miRNA: 3'- cuauuAGUGCa----GGUUCUGGa-CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 136620 | 0.67 | 0.999027 |
Target: 5'- --gGcgCugGUCCGAGGCggcgGUCCGg -3' miRNA: 3'- cuaUuaGugCAGGUUCUGga--CAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 40037 | 0.67 | 0.999027 |
Target: 5'- ------aAUGUCCcucucccucuGAGACCgUGUCCGCu -3' miRNA: 3'- cuauuagUGCAGG----------UUCUGG-ACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 61250 | 0.67 | 0.999202 |
Target: 5'- --gGAagGCGUCgAAGGCCUGcgCgGCg -3' miRNA: 3'- cuaUUagUGCAGgUUCUGGACa-GgCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 102051 | 0.67 | 0.999202 |
Target: 5'- --gGGUCuCGUCgGcGGACCUGUCUGa -3' miRNA: 3'- cuaUUAGuGCAGgU-UCUGGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 194077 | 0.67 | 0.99935 |
Target: 5'- -----gCGCGagUCCGAcGACCUGcggCCGCg -3' miRNA: 3'- cuauuaGUGC--AGGUU-CUGGACa--GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 135239 | 0.67 | 0.99935 |
Target: 5'- cGAUAAUCGCaagauGUCCGaggagauggaGGACCggcuggccagGUUCGCg -3' miRNA: 3'- -CUAUUAGUG-----CAGGU----------UCUGGa---------CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 123024 | 0.67 | 0.99935 |
Target: 5'- cGAgcGUgACGUCCGAcGGCgCUGcgccuUCCGCu -3' miRNA: 3'- -CUauUAgUGCAGGUU-CUG-GAC-----AGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 138980 | 0.67 | 0.99935 |
Target: 5'- --cAGUCGCcUCauCGAGGCCgGUCUGCa -3' miRNA: 3'- cuaUUAGUGcAG--GUUCUGGaCAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 174667 | 0.66 | 0.999462 |
Target: 5'- --gGGUCGuCG-CCGGGACCUcguucuccgucggGUCCGUg -3' miRNA: 3'- cuaUUAGU-GCaGGUUCUGGA-------------CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 161058 | 0.66 | 0.999473 |
Target: 5'- ---cAUCuccuCGUCCGAGAUCUGcUUGCg -3' miRNA: 3'- cuauUAGu---GCAGGUUCUGGACaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 152489 | 0.66 | 0.999473 |
Target: 5'- --cGGUCGCGcgCCGGuACUUGUCCaGCa -3' miRNA: 3'- cuaUUAGUGCa-GGUUcUGGACAGG-CG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 149832 | 0.66 | 0.999484 |
Target: 5'- --gGAUCugGUCCuccaggcaccugauGACCUGU-CGCc -3' miRNA: 3'- cuaUUAGugCAGGuu------------CUGGACAgGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 41771 | 0.66 | 0.999575 |
Target: 5'- aGAUGA-C-CG-CC--GACCUGUCCGCc -3' miRNA: 3'- -CUAUUaGuGCaGGuuCUGGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 58038 | 0.66 | 0.999575 |
Target: 5'- uGAUGGUCGuCGUUCAcgacGACCccUCCGCc -3' miRNA: 3'- -CUAUUAGU-GCAGGUu---CUGGacAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 116476 | 0.66 | 0.999575 |
Target: 5'- cGAUGGUgAuCGUCCAggucAGGCCUuUCCuGCu -3' miRNA: 3'- -CUAUUAgU-GCAGGU----UCUGGAcAGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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