miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 174667 0.66 0.999462
Target:  5'- --gGGUCGuCG-CCGGGACCUcguucuccgucggGUCCGUg -3'
miRNA:   3'- cuaUUAGU-GCaGGUUCUGGA-------------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 123024 0.67 0.99935
Target:  5'- cGAgcGUgACGUCCGAcGGCgCUGcgccuUCCGCu -3'
miRNA:   3'- -CUauUAgUGCAGGUU-CUG-GAC-----AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 135239 0.67 0.99935
Target:  5'- cGAUAAUCGCaagauGUCCGaggagauggaGGACCggcuggccagGUUCGCg -3'
miRNA:   3'- -CUAUUAGUG-----CAGGU----------UCUGGa---------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 194077 0.67 0.99935
Target:  5'- -----gCGCGagUCCGAcGACCUGcggCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGUU-CUGGACa--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 138980 0.67 0.99935
Target:  5'- --cAGUCGCcUCauCGAGGCCgGUCUGCa -3'
miRNA:   3'- cuaUUAGUGcAG--GUUCUGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 61250 0.67 0.999202
Target:  5'- --gGAagGCGUCgAAGGCCUGcgCgGCg -3'
miRNA:   3'- cuaUUagUGCAGgUUCUGGACa-GgCG- -5'
15947 3' -49.5 NC_004065.1 + 102051 0.67 0.999202
Target:  5'- --gGGUCuCGUCgGcGGACCUGUCUGa -3'
miRNA:   3'- cuaUUAGuGCAGgU-UCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 150871 0.67 0.999027
Target:  5'- -uUGAUCAUggagaagagGUCCAGcGACgaGUCCGUc -3'
miRNA:   3'- cuAUUAGUG---------CAGGUU-CUGgaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 40037 0.67 0.999027
Target:  5'- ------aAUGUCCcucucccucuGAGACCgUGUCCGCu -3'
miRNA:   3'- cuauuagUGCAGG----------UUCUGG-ACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 136620 0.67 0.999027
Target:  5'- --gGcgCugGUCCGAGGCggcgGUCCGg -3'
miRNA:   3'- cuaUuaGugCAGGUUCUGga--CAGGCg -5'
15947 3' -49.5 NC_004065.1 + 194769 0.67 0.999027
Target:  5'- ----cUCGCGccgucCCGAGACCggGUCgCGCa -3'
miRNA:   3'- cuauuAGUGCa----GGUUCUGGa-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 52049 0.67 0.99882
Target:  5'- ------aGCGgUgAAGACCUGUCUGCa -3'
miRNA:   3'- cuauuagUGCaGgUUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 186935 0.67 0.998576
Target:  5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3'
miRNA:   3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 80384 0.68 0.998291
Target:  5'- -----gCGCGUgCAGGGCCUG-CCGa -3'
miRNA:   3'- cuauuaGUGCAgGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 86901 0.68 0.998291
Target:  5'- aGUGAUCAUGUCgAcGACCUuucccGgcgCCGCg -3'
miRNA:   3'- cUAUUAGUGCAGgUuCUGGA-----Ca--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 123817 0.68 0.998197
Target:  5'- aGAUA--CACGUUCAucgggaAGACCUGgaacagguccugcaUCCGCg -3'
miRNA:   3'- -CUAUuaGUGCAGGU------UCUGGAC--------------AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 67852 0.68 0.997576
Target:  5'- -----gCACGgCgAAGACCUGcgCCGCa -3'
miRNA:   3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 109461 0.68 0.997576
Target:  5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3'
miRNA:   3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 163420 0.68 0.997134
Target:  5'- -----cCGCGgcUCC-GGAuCCUGUCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGuUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 184184 0.68 0.997134
Target:  5'- ---cAUCGCGUCCcgugcGGCCgGUCCGa -3'
miRNA:   3'- cuauUAGUGCAGGuu---CUGGaCAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.