miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 21647 1.14 0.009605
Target:  5'- cGAUAAUCACGUCCAAGACCUGUCCGCg -3'
miRNA:   3'- -CUAUUAGUGCAGGUUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 21951 0.69 0.992863
Target:  5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3'
miRNA:   3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 27389 0.73 0.939814
Target:  5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3'
miRNA:   3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 27876 0.66 0.999786
Target:  5'- aGAUGG--ACGgCCGGGACCUccGUCCGa -3'
miRNA:   3'- -CUAUUagUGCaGGUUCUGGA--CAGGCg -5'
15947 3' -49.5 NC_004065.1 + 28310 0.82 0.570142
Target:  5'- --aGAUCACGUCgCcccgugaagacggacAGGGCCUGUCCGCg -3'
miRNA:   3'- cuaUUAGUGCAG-G---------------UUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 28701 0.72 0.960692
Target:  5'- ----cUCACGUCCcggcagggcgGAGAuCCUGUCCGa -3'
miRNA:   3'- cuauuAGUGCAGG----------UUCU-GGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 29531 0.7 0.990639
Target:  5'- --gGAUCACuUCagagaccaGAGGCCUGUCgGCa -3'
miRNA:   3'- cuaUUAGUGcAGg-------UUCUGGACAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 40037 0.67 0.999027
Target:  5'- ------aAUGUCCcucucccucuGAGACCgUGUCCGCu -3'
miRNA:   3'- cuauuagUGCAGG----------UUCUGG-ACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 40795 0.7 0.991811
Target:  5'- ----cUCACGUCCAAGACUUcGUagacgaggaCGCg -3'
miRNA:   3'- cuauuAGUGCAGGUUCUGGA-CAg--------GCG- -5'
15947 3' -49.5 NC_004065.1 + 41771 0.66 0.999575
Target:  5'- aGAUGA-C-CG-CC--GACCUGUCCGCc -3'
miRNA:   3'- -CUAUUaGuGCaGGuuCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 44775 0.76 0.872566
Target:  5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3'
miRNA:   3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 50276 0.69 0.995389
Target:  5'- cGAU--UCGgGccCCGAGACCgccGUCCGCg -3'
miRNA:   3'- -CUAuuAGUgCa-GGUUCUGGa--CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 51535 0.72 0.960692
Target:  5'- ---cGUCGCGUCCGAugaugaagauGACCUGUCuCGa -3'
miRNA:   3'- cuauUAGUGCAGGUU----------CUGGACAG-GCg -5'
15947 3' -49.5 NC_004065.1 + 52049 0.67 0.99882
Target:  5'- ------aGCGgUgAAGACCUGUCUGCa -3'
miRNA:   3'- cuauuagUGCaGgUUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 54644 0.66 0.999786
Target:  5'- --gGAUCGuCGUCC---GCCUGcugCCGCa -3'
miRNA:   3'- cuaUUAGU-GCAGGuucUGGACa--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 55811 0.7 0.990639
Target:  5'- aGAUGAUCAcCGUCCcuuccacAGACCaucGUcCCGCg -3'
miRNA:   3'- -CUAUUAGU-GCAGGu------UCUGGa--CA-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 55884 0.69 0.994644
Target:  5'- --cGAUCgGCGUCC-AGGCCgaugCCGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuUCUGGaca-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 58038 0.66 0.999575
Target:  5'- uGAUGGUCGuCGUUCAcgacGACCccUCCGCc -3'
miRNA:   3'- -CUAUUAGU-GCAGGUu---CUGGacAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 61250 0.67 0.999202
Target:  5'- --gGAagGCGUCgAAGGCCUGcgCgGCg -3'
miRNA:   3'- cuaUUagUGCAGgUUCUGGACa-GgCG- -5'
15947 3' -49.5 NC_004065.1 + 64370 0.79 0.740496
Target:  5'- --gGAUCGCGUCCugcAGGCuCUGUCCGa -3'
miRNA:   3'- cuaUUAGUGCAGGu--UCUG-GACAGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.