miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 65615 0.66 0.999652
Target:  5'- ---cAUCGCGUUCAcgcuggaccaggaGGACCUGacggacCCGCu -3'
miRNA:   3'- cuauUAGUGCAGGU-------------UCUGGACa-----GGCG- -5'
15947 3' -49.5 NC_004065.1 + 67480 0.7 0.990515
Target:  5'- --aGAUCGagucucgagagccCGUCCGAGACCUGgccCgGCg -3'
miRNA:   3'- cuaUUAGU-------------GCAGGUUCUGGACa--GgCG- -5'
15947 3' -49.5 NC_004065.1 + 67852 0.68 0.997576
Target:  5'- -----gCACGgCgAAGACCUGcgCCGCa -3'
miRNA:   3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 77954 0.66 0.999786
Target:  5'- --cGAUCuACGUgacgucgagccCCGAGACgCUGgCCGCg -3'
miRNA:   3'- cuaUUAG-UGCA-----------GGUUCUG-GACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 78760 0.66 0.999611
Target:  5'- cGUGAUCacgcagucgagguuaGCGgCCAGGACCUGgaCGCu -3'
miRNA:   3'- cUAUUAG---------------UGCaGGUUCUGGACagGCG- -5'
15947 3' -49.5 NC_004065.1 + 80384 0.68 0.998291
Target:  5'- -----gCGCGUgCAGGGCCUG-CCGa -3'
miRNA:   3'- cuauuaGUGCAgGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 86901 0.68 0.998291
Target:  5'- aGUGAUCAUGUCgAcGACCUuucccGgcgCCGCg -3'
miRNA:   3'- cUAUUAGUGCAGgUuCUGGA-----Ca--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 88293 0.73 0.953051
Target:  5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3'
miRNA:   3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 88871 0.66 0.999575
Target:  5'- ---cGUCACGUCgAAguGACCgacgCCGCa -3'
miRNA:   3'- cuauUAGUGCAGgUU--CUGGaca-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 90060 0.69 0.994644
Target:  5'- --cAGUa--GUCCAGGACCUGcCCGa -3'
miRNA:   3'- cuaUUAgugCAGGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 90336 0.66 0.999575
Target:  5'- -----gCGCGUCCGcGaACUcGUCCGCg -3'
miRNA:   3'- cuauuaGUGCAGGUuC-UGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 102051 0.67 0.999202
Target:  5'- --gGGUCuCGUCgGcGGACCUGUCUGa -3'
miRNA:   3'- cuaUUAGuGCAGgU-UCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 107619 0.66 0.99973
Target:  5'- cGGUAuAUCcCGUCCAGgugauGACCUGauggCUGCa -3'
miRNA:   3'- -CUAU-UAGuGCAGGUU-----CUGGACa---GGCG- -5'
15947 3' -49.5 NC_004065.1 + 109014 0.69 0.993805
Target:  5'- ---cAUCGCcUUCAAGAuCCUGuUCCGCg -3'
miRNA:   3'- cuauUAGUGcAGGUUCU-GGAC-AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 109461 0.68 0.997576
Target:  5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3'
miRNA:   3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 112523 0.71 0.975933
Target:  5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 116476 0.66 0.999575
Target:  5'- cGAUGGUgAuCGUCCAggucAGGCCUuUCCuGCu -3'
miRNA:   3'- -CUAUUAgU-GCAGGU----UCUGGAcAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 117027 0.66 0.999575
Target:  5'- ----cUCACGUgccgaCCGAGACgCUGcaCCGCg -3'
miRNA:   3'- cuauuAGUGCA-----GGUUCUG-GACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 122141 0.74 0.918752
Target:  5'- --aGAUCACGUCCGuGAUCUG-CCGg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 123024 0.67 0.99935
Target:  5'- cGAgcGUgACGUCCGAcGGCgCUGcgccuUCCGCu -3'
miRNA:   3'- -CUauUAgUGCAGGUU-CUG-GAC-----AGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.