miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 217484 0.66 0.99966
Target:  5'- -----cCACGUUCAAGAUCacgcagGUUCGCu -3'
miRNA:   3'- cuauuaGUGCAGGUUCUGGa-----CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 200398 0.69 0.996047
Target:  5'- uGUGGUCguucuGCG-CCAGGAagaUGUCCGCg -3'
miRNA:   3'- cUAUUAG-----UGCaGGUUCUgg-ACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 199654 0.76 0.872566
Target:  5'- --aGGUCACGUCCAuGuCCggGUCCGUg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCuGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 194769 0.67 0.999027
Target:  5'- ----cUCGCGccgucCCGAGACCggGUCgCGCa -3'
miRNA:   3'- cuauuAGUGCa----GGUUCUGGa-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 194077 0.67 0.99935
Target:  5'- -----gCGCGagUCCGAcGACCUGcggCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGUU-CUGGACa--GGCG- -5'
15947 3' -49.5 NC_004065.1 + 186935 0.67 0.998576
Target:  5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3'
miRNA:   3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 184184 0.68 0.997134
Target:  5'- ---cAUCGCGUCCcgugcGGCCgGUCCGa -3'
miRNA:   3'- cuauUAGUGCAGGuu---CUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 174667 0.66 0.999462
Target:  5'- --gGGUCGuCG-CCGGGACCUcguucuccgucggGUCCGUg -3'
miRNA:   3'- cuaUUAGU-GCaGGUUCUGGA-------------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 165857 0.66 0.99973
Target:  5'- cGGUAuacUUGCGuaacUCCGAGACCagGUCgGCg -3'
miRNA:   3'- -CUAUu--AGUGC----AGGUUCUGGa-CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 164856 0.72 0.967428
Target:  5'- --cGAUCACGUCUuuGACgCUGacgagCCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGuuCUG-GACa----GGCG- -5'
15947 3' -49.5 NC_004065.1 + 163420 0.68 0.997134
Target:  5'- -----cCGCGgcUCC-GGAuCCUGUCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGuUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 162891 0.75 0.886937
Target:  5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 161489 0.73 0.939814
Target:  5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3'
miRNA:   3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 161058 0.66 0.999473
Target:  5'- ---cAUCuccuCGUCCGAGAUCUGcUUGCg -3'
miRNA:   3'- cuauUAGu---GCAGGUUCUGGACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 157707 0.66 0.99973
Target:  5'- aGGUGAUCACcgUCGGGACCgcgGU-CGCg -3'
miRNA:   3'- -CUAUUAGUGcaGGUUCUGGa--CAgGCG- -5'
15947 3' -49.5 NC_004065.1 + 152489 0.66 0.999473
Target:  5'- --cGGUCGCGcgCCGGuACUUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCa-GGUUcUGGACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 152417 0.66 0.99966
Target:  5'- ---cGUCACGgccaaaaCCAAGGCCUGcgUCGUc -3'
miRNA:   3'- cuauUAGUGCa------GGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 152193 0.78 0.750327
Target:  5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3'
miRNA:   3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 152058 0.7 0.986321
Target:  5'- aGGUAcuUCACGgcgcUCCAcGACCgcGUCCGCa -3'
miRNA:   3'- -CUAUu-AGUGC----AGGUuCUGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 151249 0.73 0.953051
Target:  5'- ------aGCGUCCAGGuCCUGgCCGCu -3'
miRNA:   3'- cuauuagUGCAGGUUCuGGACaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.