miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 150871 0.67 0.999027
Target:  5'- -uUGAUCAUggagaagagGUCCAGcGACgaGUCCGUc -3'
miRNA:   3'- cuAUUAGUG---------CAGGUU-CUGgaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 149832 0.66 0.999484
Target:  5'- --gGAUCugGUCCuccaggcaccugauGACCUGU-CGCc -3'
miRNA:   3'- cuaUUAGugCAGGuu------------CUGGACAgGCG- -5'
15947 3' -49.5 NC_004065.1 + 146531 0.66 0.99966
Target:  5'- --aGAUCAgGUCCuuggucGGCCUGcCCGa -3'
miRNA:   3'- cuaUUAGUgCAGGuu----CUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 143995 0.7 0.990515
Target:  5'- aGAUGGUCugGgcgcacaUUCGAGAgcucguCCUGUCCGUc -3'
miRNA:   3'- -CUAUUAGugC-------AGGUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 143157 0.7 0.989339
Target:  5'- cGGUGAUgACGaCgAGGAcuucauCCUGUCCGCc -3'
miRNA:   3'- -CUAUUAgUGCaGgUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 139674 0.71 0.980618
Target:  5'- --gGAUCGCGUUCAucgcgacgcGGACgaGUUCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU---------UCUGgaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138980 0.67 0.99935
Target:  5'- --cAGUCGCcUCauCGAGGCCgGUCUGCa -3'
miRNA:   3'- cuaUUAGUGcAG--GUUCUGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138589 0.71 0.980618
Target:  5'- ------gGCGUCC-AGGCCUucaGUCCGCu -3'
miRNA:   3'- cuauuagUGCAGGuUCUGGA---CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138058 0.72 0.967428
Target:  5'- uGGUGAUCACgGUCguGGGCUUGUgUCGCu -3'
miRNA:   3'- -CUAUUAGUG-CAGguUCUGGACA-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 136620 0.67 0.999027
Target:  5'- --gGcgCugGUCCGAGGCggcgGUCCGg -3'
miRNA:   3'- cuaUuaGugCAGGUUCUGga--CAGGCg -5'
15947 3' -49.5 NC_004065.1 + 135239 0.67 0.99935
Target:  5'- cGAUAAUCGCaagauGUCCGaggagauggaGGACCggcuggccagGUUCGCg -3'
miRNA:   3'- -CUAUUAGUG-----CAGGU----------UCUGGa---------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 132002 0.68 0.997134
Target:  5'- --cGAUCgACGUCUccGAgCUGUCCaGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuuCUgGACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 123817 0.68 0.998197
Target:  5'- aGAUA--CACGUUCAucgggaAGACCUGgaacagguccugcaUCCGCg -3'
miRNA:   3'- -CUAUuaGUGCAGGU------UCUGGAC--------------AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 123646 0.71 0.980618
Target:  5'- uGAUGAUCACgGUCCuGGACCgcaggaGUCCc- -3'
miRNA:   3'- -CUAUUAGUG-CAGGuUCUGGa-----CAGGcg -5'
15947 3' -49.5 NC_004065.1 + 123024 0.67 0.99935
Target:  5'- cGAgcGUgACGUCCGAcGGCgCUGcgccuUCCGCu -3'
miRNA:   3'- -CUauUAgUGCAGGUU-CUG-GAC-----AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 122141 0.74 0.918752
Target:  5'- --aGAUCACGUCCGuGAUCUG-CCGg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 117027 0.66 0.999575
Target:  5'- ----cUCACGUgccgaCCGAGACgCUGcaCCGCg -3'
miRNA:   3'- cuauuAGUGCA-----GGUUCUG-GACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 116476 0.66 0.999575
Target:  5'- cGAUGGUgAuCGUCCAggucAGGCCUuUCCuGCu -3'
miRNA:   3'- -CUAUUAgU-GCAGGU----UCUGGAcAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 112523 0.71 0.975933
Target:  5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 109461 0.68 0.997576
Target:  5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3'
miRNA:   3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.