miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 67852 0.68 0.997576
Target:  5'- -----gCACGgCgAAGACCUGcgCCGCa -3'
miRNA:   3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 40795 0.7 0.991811
Target:  5'- ----cUCACGUCCAAGACUUcGUagacgaggaCGCg -3'
miRNA:   3'- cuauuAGUGCAGGUUCUGGA-CAg--------GCG- -5'
15947 3' -49.5 NC_004065.1 + 21951 0.69 0.992863
Target:  5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3'
miRNA:   3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 90060 0.69 0.994644
Target:  5'- --cAGUa--GUCCAGGACCUGcCCGa -3'
miRNA:   3'- cuaUUAgugCAGGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 55884 0.69 0.994644
Target:  5'- --cGAUCgGCGUCC-AGGCCgaugCCGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuUCUGGaca-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 50276 0.69 0.995389
Target:  5'- cGAU--UCGgGccCCGAGACCgccGUCCGCg -3'
miRNA:   3'- -CUAuuAGUgCa-GGUUCUGGa--CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 200398 0.69 0.996047
Target:  5'- uGUGGUCguucuGCG-CCAGGAagaUGUCCGCg -3'
miRNA:   3'- cUAUUAG-----UGCaGGUUCUgg-ACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 132002 0.68 0.997134
Target:  5'- --cGAUCgACGUCUccGAgCUGUCCaGCa -3'
miRNA:   3'- cuaUUAG-UGCAGGuuCUgGACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 109461 0.68 0.997576
Target:  5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3'
miRNA:   3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 143157 0.7 0.989339
Target:  5'- cGGUGAUgACGaCgAGGAcuucauCCUGUCCGCc -3'
miRNA:   3'- -CUAUUAgUGCaGgUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 152058 0.7 0.986321
Target:  5'- aGGUAcuUCACGgcgcUCCAcGACCgcGUCCGCa -3'
miRNA:   3'- -CUAUu-AGUGC----AGGUuCUGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 139674 0.71 0.980618
Target:  5'- --gGAUCGCGUUCAucgcgacgcGGACgaGUUCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU---------UCUGgaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 28310 0.82 0.570142
Target:  5'- --aGAUCACGUCgCcccgugaagacggacAGGGCCUGUCCGCg -3'
miRNA:   3'- cuaUUAGUGCAG-G---------------UUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 152193 0.78 0.750327
Target:  5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3'
miRNA:   3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 199654 0.76 0.872566
Target:  5'- --aGGUCACGUCCAuGuCCggGUCCGUg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCuGGa-CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 122141 0.74 0.918752
Target:  5'- --aGAUCACGUCCGuGAUCUG-CCGg -3'
miRNA:   3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 151249 0.73 0.953051
Target:  5'- ------aGCGUCCAGGuCCUGgCCGCu -3'
miRNA:   3'- cuauuagUGCAGGUUCuGGACaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 88293 0.73 0.953051
Target:  5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3'
miRNA:   3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 51535 0.72 0.960692
Target:  5'- ---cGUCGCGUCCGAugaugaagauGACCUGUCuCGa -3'
miRNA:   3'- cuauUAGUGCAGGUU----------CUGGACAG-GCg -5'
15947 3' -49.5 NC_004065.1 + 138058 0.72 0.967428
Target:  5'- uGGUGAUCACgGUCguGGGCUUGUgUCGCu -3'
miRNA:   3'- -CUAUUAGUG-CAGguUCUGGACA-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.