Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15947 | 3' | -49.5 | NC_004065.1 | + | 67852 | 0.68 | 0.997576 |
Target: 5'- -----gCACGgCgAAGACCUGcgCCGCa -3' miRNA: 3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 109461 | 0.68 | 0.997576 |
Target: 5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3' miRNA: 3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 138058 | 0.72 | 0.967428 |
Target: 5'- uGGUGAUCACgGUCguGGGCUUGUgUCGCu -3' miRNA: 3'- -CUAUUAGUG-CAGguUCUGGACA-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 51535 | 0.72 | 0.960692 |
Target: 5'- ---cGUCGCGUCCGAugaugaagauGACCUGUCuCGa -3' miRNA: 3'- cuauUAGUGCAGGUU----------CUGGACAG-GCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 88293 | 0.73 | 0.953051 |
Target: 5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3' miRNA: 3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 151249 | 0.73 | 0.953051 |
Target: 5'- ------aGCGUCCAGGuCCUGgCCGCu -3' miRNA: 3'- cuauuagUGCAGGUUCuGGACaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 122141 | 0.74 | 0.918752 |
Target: 5'- --aGAUCACGUCCGuGAUCUG-CCGg -3' miRNA: 3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 199654 | 0.76 | 0.872566 |
Target: 5'- --aGGUCACGUCCAuGuCCggGUCCGUg -3' miRNA: 3'- cuaUUAGUGCAGGUuCuGGa-CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 152193 | 0.78 | 0.750327 |
Target: 5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3' miRNA: 3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 28310 | 0.82 | 0.570142 |
Target: 5'- --aGAUCACGUCgCcccgugaagacggacAGGGCCUGUCCGCg -3' miRNA: 3'- cuaUUAGUGCAG-G---------------UUCUGGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 139674 | 0.71 | 0.980618 |
Target: 5'- --gGAUCGCGUUCAucgcgacgcGGACgaGUUCGCg -3' miRNA: 3'- cuaUUAGUGCAGGU---------UCUGgaCAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 152058 | 0.7 | 0.986321 |
Target: 5'- aGGUAcuUCACGgcgcUCCAcGACCgcGUCCGCa -3' miRNA: 3'- -CUAUu-AGUGC----AGGUuCUGGa-CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 132002 | 0.68 | 0.997134 |
Target: 5'- --cGAUCgACGUCUccGAgCUGUCCaGCa -3' miRNA: 3'- cuaUUAG-UGCAGGuuCUgGACAGG-CG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 200398 | 0.69 | 0.996047 |
Target: 5'- uGUGGUCguucuGCG-CCAGGAagaUGUCCGCg -3' miRNA: 3'- cUAUUAG-----UGCaGGUUCUgg-ACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 50276 | 0.69 | 0.995389 |
Target: 5'- cGAU--UCGgGccCCGAGACCgccGUCCGCg -3' miRNA: 3'- -CUAuuAGUgCa-GGUUCUGGa--CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 55884 | 0.69 | 0.994644 |
Target: 5'- --cGAUCgGCGUCC-AGGCCgaugCCGCa -3' miRNA: 3'- cuaUUAG-UGCAGGuUCUGGaca-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 90060 | 0.69 | 0.994644 |
Target: 5'- --cAGUa--GUCCAGGACCUGcCCGa -3' miRNA: 3'- cuaUUAgugCAGGUUCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 21951 | 0.69 | 0.992863 |
Target: 5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3' miRNA: 3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 40795 | 0.7 | 0.991811 |
Target: 5'- ----cUCACGUCCAAGACUUcGUagacgaggaCGCg -3' miRNA: 3'- cuauuAGUGCAGGUUCUGGA-CAg--------GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 143157 | 0.7 | 0.989339 |
Target: 5'- cGGUGAUgACGaCgAGGAcuucauCCUGUCCGCc -3' miRNA: 3'- -CUAUUAgUGCaGgUUCU------GGACAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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