Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15947 | 3' | -49.5 | NC_004065.1 | + | 143157 | 0.7 | 0.989339 |
Target: 5'- cGGUGAUgACGaCgAGGAcuucauCCUGUCCGCc -3' miRNA: 3'- -CUAUUAgUGCaGgUUCU------GGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 67480 | 0.7 | 0.990515 |
Target: 5'- --aGAUCGagucucgagagccCGUCCGAGACCUGgccCgGCg -3' miRNA: 3'- cuaUUAGU-------------GCAGGUUCUGGACa--GgCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 29531 | 0.7 | 0.990639 |
Target: 5'- --gGAUCACuUCagagaccaGAGGCCUGUCgGCa -3' miRNA: 3'- cuaUUAGUGcAGg-------UUCUGGACAGgCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 55811 | 0.7 | 0.990639 |
Target: 5'- aGAUGAUCAcCGUCCcuuccacAGACCaucGUcCCGCg -3' miRNA: 3'- -CUAUUAGU-GCAGGu------UCUGGa--CA-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 109014 | 0.69 | 0.993805 |
Target: 5'- ---cAUCGCcUUCAAGAuCCUGuUCCGCg -3' miRNA: 3'- cuauUAGUGcAGGUUCU-GGAC-AGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 163420 | 0.68 | 0.997134 |
Target: 5'- -----cCGCGgcUCC-GGAuCCUGUCCGCg -3' miRNA: 3'- cuauuaGUGC--AGGuUCU-GGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 184184 | 0.68 | 0.997134 |
Target: 5'- ---cAUCGCGUCCcgugcGGCCgGUCCGa -3' miRNA: 3'- cuauUAGUGCAGGuu---CUGGaCAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 80384 | 0.68 | 0.998291 |
Target: 5'- -----gCGCGUgCAGGGCCUG-CCGa -3' miRNA: 3'- cuauuaGUGCAgGUUCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 186935 | 0.67 | 0.998576 |
Target: 5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3' miRNA: 3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 143995 | 0.7 | 0.990515 |
Target: 5'- aGAUGGUCugGgcgcacaUUCGAGAgcucguCCUGUCCGUc -3' miRNA: 3'- -CUAUUAGugC-------AGGUUCU------GGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 123646 | 0.71 | 0.980618 |
Target: 5'- uGAUGAUCACgGUCCuGGACCgcaggaGUCCc- -3' miRNA: 3'- -CUAUUAGUG-CAGGuUCUGGa-----CAGGcg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 138589 | 0.71 | 0.980618 |
Target: 5'- ------gGCGUCC-AGGCCUucaGUCCGCu -3' miRNA: 3'- cuauuagUGCAGGuUCUGGA---CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 27876 | 0.66 | 0.999786 |
Target: 5'- aGAUGG--ACGgCCGGGACCUccGUCCGa -3' miRNA: 3'- -CUAUUagUGCaGGUUCUGGA--CAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 44775 | 0.76 | 0.872566 |
Target: 5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3' miRNA: 3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 162891 | 0.75 | 0.886937 |
Target: 5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3' miRNA: 3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 27389 | 0.73 | 0.939814 |
Target: 5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3' miRNA: 3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 161489 | 0.73 | 0.939814 |
Target: 5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3' miRNA: 3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 28701 | 0.72 | 0.960692 |
Target: 5'- ----cUCACGUCCcggcagggcgGAGAuCCUGUCCGa -3' miRNA: 3'- cuauuAGUGCAGG----------UUCU-GGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 164856 | 0.72 | 0.967428 |
Target: 5'- --cGAUCACGUCUuuGACgCUGacgagCCGCg -3' miRNA: 3'- cuaUUAGUGCAGGuuCUG-GACa----GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 112523 | 0.71 | 0.975933 |
Target: 5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3' miRNA: 3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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