miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 64370 0.79 0.740496
Target:  5'- --gGAUCGCGUCCugcAGGCuCUGUCCGa -3'
miRNA:   3'- cuaUUAGUGCAGGu--UCUG-GACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 80384 0.68 0.998291
Target:  5'- -----gCGCGUgCAGGGCCUG-CCGa -3'
miRNA:   3'- cuauuaGUGCAgGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 52049 0.67 0.99882
Target:  5'- ------aGCGgUgAAGACCUGUCUGCa -3'
miRNA:   3'- cuauuagUGCaGgUUCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 27876 0.66 0.999786
Target:  5'- aGAUGG--ACGgCCGGGACCUccGUCCGa -3'
miRNA:   3'- -CUAUUagUGCaGGUUCUGGA--CAGGCg -5'
15947 3' -49.5 NC_004065.1 + 161489 0.73 0.939814
Target:  5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3'
miRNA:   3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 28701 0.72 0.960692
Target:  5'- ----cUCACGUCCcggcagggcgGAGAuCCUGUCCGa -3'
miRNA:   3'- cuauuAGUGCAGG----------UUCU-GGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 112523 0.71 0.975933
Target:  5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138589 0.71 0.980618
Target:  5'- ------gGCGUCC-AGGCCUucaGUCCGCu -3'
miRNA:   3'- cuauuagUGCAGGuUCUGGA---CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 67480 0.7 0.990515
Target:  5'- --aGAUCGagucucgagagccCGUCCGAGACCUGgccCgGCg -3'
miRNA:   3'- cuaUUAGU-------------GCAGGUUCUGGACa--GgCG- -5'
15947 3' -49.5 NC_004065.1 + 184184 0.68 0.997134
Target:  5'- ---cAUCGCGUCCcgugcGGCCgGUCCGa -3'
miRNA:   3'- cuauUAGUGCAGGuu---CUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 55811 0.7 0.990639
Target:  5'- aGAUGAUCAcCGUCCcuuccacAGACCaucGUcCCGCg -3'
miRNA:   3'- -CUAUUAGU-GCAGGu------UCUGGa--CA-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 143995 0.7 0.990515
Target:  5'- aGAUGGUCugGgcgcacaUUCGAGAgcucguCCUGUCCGUc -3'
miRNA:   3'- -CUAUUAGugC-------AGGUUCU------GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 44775 0.76 0.872566
Target:  5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3'
miRNA:   3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 109014 0.69 0.993805
Target:  5'- ---cAUCGCcUUCAAGAuCCUGuUCCGCg -3'
miRNA:   3'- cuauUAGUGcAGGUUCU-GGAC-AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 162891 0.75 0.886937
Target:  5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 123646 0.71 0.980618
Target:  5'- uGAUGAUCACgGUCCuGGACCgcaggaGUCCc- -3'
miRNA:   3'- -CUAUUAGUG-CAGGuUCUGGa-----CAGGcg -5'
15947 3' -49.5 NC_004065.1 + 163420 0.68 0.997134
Target:  5'- -----cCGCGgcUCC-GGAuCCUGUCCGCg -3'
miRNA:   3'- cuauuaGUGC--AGGuUCU-GGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 186935 0.67 0.998576
Target:  5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3'
miRNA:   3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 27389 0.73 0.939814
Target:  5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3'
miRNA:   3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 164856 0.72 0.967428
Target:  5'- --cGAUCACGUCUuuGACgCUGacgagCCGCg -3'
miRNA:   3'- cuaUUAGUGCAGGuuCUG-GACa----GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.