miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15947 3' -49.5 NC_004065.1 + 186935 0.67 0.998576
Target:  5'- --gGGUCGCGgaugCCcGGACC-GUCCGa -3'
miRNA:   3'- cuaUUAGUGCa---GGuUCUGGaCAGGCg -5'
15947 3' -49.5 NC_004065.1 + 117027 0.66 0.999575
Target:  5'- ----cUCACGUgccgaCCGAGACgCUGcaCCGCg -3'
miRNA:   3'- cuauuAGUGCA-----GGUUCUG-GACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 80384 0.68 0.998291
Target:  5'- -----gCGCGUgCAGGGCCUG-CCGa -3'
miRNA:   3'- cuauuaGUGCAgGUUCUGGACaGGCg -5'
15947 3' -49.5 NC_004065.1 + 162891 0.75 0.886937
Target:  5'- --cGAUCGCGUCCAGGcgcgcGCCgcUGUCCaGCa -3'
miRNA:   3'- cuaUUAGUGCAGGUUC-----UGG--ACAGG-CG- -5'
15947 3' -49.5 NC_004065.1 + 41771 0.66 0.999575
Target:  5'- aGAUGA-C-CG-CC--GACCUGUCCGCc -3'
miRNA:   3'- -CUAUUaGuGCaGGuuCUGGACAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 138980 0.67 0.99935
Target:  5'- --cAGUCGCcUCauCGAGGCCgGUCUGCa -3'
miRNA:   3'- cuaUUAGUGcAG--GUUCUGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 90336 0.66 0.999575
Target:  5'- -----gCGCGUCCGcGaACUcGUCCGCg -3'
miRNA:   3'- cuauuaGUGCAGGUuC-UGGaCAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 165857 0.66 0.99973
Target:  5'- cGGUAuacUUGCGuaacUCCGAGACCagGUCgGCg -3'
miRNA:   3'- -CUAUu--AGUGC----AGGUUCUGGa-CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 44775 0.76 0.872566
Target:  5'- --cAGgguCGUCCGAGGCCUGggCCGCa -3'
miRNA:   3'- cuaUUaguGCAGGUUCUGGACa-GGCG- -5'
15947 3' -49.5 NC_004065.1 + 64370 0.79 0.740496
Target:  5'- --gGAUCGCGUCCugcAGGCuCUGUCCGa -3'
miRNA:   3'- cuaUUAGUGCAGGu--UCUG-GACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 161489 0.73 0.939814
Target:  5'- --aGAUCGCGUCCAGGAUCUugcgguaaGUCgCGUc -3'
miRNA:   3'- cuaUUAGUGCAGGUUCUGGA--------CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 112523 0.71 0.975933
Target:  5'- --gGAUCGCGUCCGgAGACUg--CUGCg -3'
miRNA:   3'- cuaUUAGUGCAGGU-UCUGGacaGGCG- -5'
15947 3' -49.5 NC_004065.1 + 27389 0.73 0.939814
Target:  5'- uGAUGAgcacUCAgGU-CGAGGCCUGUCCGg -3'
miRNA:   3'- -CUAUU----AGUgCAgGUUCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 88293 0.73 0.953051
Target:  5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3'
miRNA:   3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5'
15947 3' -49.5 NC_004065.1 + 174667 0.66 0.999462
Target:  5'- --gGGUCGuCG-CCGGGACCUcguucuccgucggGUCCGUg -3'
miRNA:   3'- cuaUUAGU-GCaGGUUCUGGA-------------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 123024 0.67 0.99935
Target:  5'- cGAgcGUgACGUCCGAcGGCgCUGcgccuUCCGCu -3'
miRNA:   3'- -CUauUAgUGCAGGUU-CUG-GAC-----AGGCG- -5'
15947 3' -49.5 NC_004065.1 + 135239 0.67 0.99935
Target:  5'- cGAUAAUCGCaagauGUCCGaggagauggaGGACCggcuggccagGUUCGCg -3'
miRNA:   3'- -CUAUUAGUG-----CAGGU----------UCUGGa---------CAGGCG- -5'
15947 3' -49.5 NC_004065.1 + 102051 0.67 0.999202
Target:  5'- --gGGUCuCGUCgGcGGACCUGUCUGa -3'
miRNA:   3'- cuaUUAGuGCAGgU-UCUGGACAGGCg -5'
15947 3' -49.5 NC_004065.1 + 21951 0.69 0.992863
Target:  5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3'
miRNA:   3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5'
15947 3' -49.5 NC_004065.1 + 90060 0.69 0.994644
Target:  5'- --cAGUa--GUCCAGGACCUGcCCGa -3'
miRNA:   3'- cuaUUAgugCAGGUUCUGGACaGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.