Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15947 | 3' | -49.5 | NC_004065.1 | + | 88293 | 0.73 | 0.953051 |
Target: 5'- uGAUGAggccggcguUCACGUCCucGGCCUcGUCgCGCc -3' miRNA: 3'- -CUAUU---------AGUGCAGGuuCUGGA-CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 151249 | 0.73 | 0.953051 |
Target: 5'- ------aGCGUCCAGGuCCUGgCCGCu -3' miRNA: 3'- cuauuagUGCAGGUUCuGGACaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 122141 | 0.74 | 0.918752 |
Target: 5'- --aGAUCACGUCCGuGAUCUG-CCGg -3' miRNA: 3'- cuaUUAGUGCAGGUuCUGGACaGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 135239 | 0.67 | 0.99935 |
Target: 5'- cGAUAAUCGCaagauGUCCGaggagauggaGGACCggcuggccagGUUCGCg -3' miRNA: 3'- -CUAUUAGUG-----CAGGU----------UCUGGa---------CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 152193 | 0.78 | 0.750327 |
Target: 5'- -----cCGCGUCCgGAGACCUGguUCCGCa -3' miRNA: 3'- cuauuaGUGCAGG-UUCUGGAC--AGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 102051 | 0.67 | 0.999202 |
Target: 5'- --gGGUCuCGUCgGcGGACCUGUCUGa -3' miRNA: 3'- cuaUUAGuGCAGgU-UCUGGACAGGCg -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 40795 | 0.7 | 0.991811 |
Target: 5'- ----cUCACGUCCAAGACUUcGUagacgaggaCGCg -3' miRNA: 3'- cuauuAGUGCAGGUUCUGGA-CAg--------GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 21951 | 0.69 | 0.992863 |
Target: 5'- -cUGAUgGCGgCCAGGGCCgucGUCgGCa -3' miRNA: 3'- cuAUUAgUGCaGGUUCUGGa--CAGgCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 67852 | 0.68 | 0.997576 |
Target: 5'- -----gCACGgCgAAGACCUGcgCCGCa -3' miRNA: 3'- cuauuaGUGCaGgUUCUGGACa-GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 109461 | 0.68 | 0.997576 |
Target: 5'- ----cUCACGcagaUCGAGAgCCUGUCCGUc -3' miRNA: 3'- cuauuAGUGCa---GGUUCU-GGACAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 217484 | 0.66 | 0.99966 |
Target: 5'- -----cCACGUUCAAGAUCacgcagGUUCGCu -3' miRNA: 3'- cuauuaGUGCAGGUUCUGGa-----CAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 157707 | 0.66 | 0.99973 |
Target: 5'- aGGUGAUCACcgUCGGGACCgcgGU-CGCg -3' miRNA: 3'- -CUAUUAGUGcaGGUUCUGGa--CAgGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 107619 | 0.66 | 0.99973 |
Target: 5'- cGGUAuAUCcCGUCCAGgugauGACCUGauggCUGCa -3' miRNA: 3'- -CUAU-UAGuGCAGGUU-----CUGGACa---GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 54644 | 0.66 | 0.999786 |
Target: 5'- --gGAUCGuCGUCC---GCCUGcugCCGCa -3' miRNA: 3'- cuaUUAGU-GCAGGuucUGGACa--GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 77954 | 0.66 | 0.999786 |
Target: 5'- --cGAUCuACGUgacgucgagccCCGAGACgCUGgCCGCg -3' miRNA: 3'- cuaUUAG-UGCA-----------GGUUCUG-GACaGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 132002 | 0.68 | 0.997134 |
Target: 5'- --cGAUCgACGUCUccGAgCUGUCCaGCa -3' miRNA: 3'- cuaUUAG-UGCAGGuuCUgGACAGG-CG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 86901 | 0.68 | 0.998291 |
Target: 5'- aGUGAUCAUGUCgAcGACCUuucccGgcgCCGCg -3' miRNA: 3'- cUAUUAGUGCAGgUuCUGGA-----Ca--GGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 150871 | 0.67 | 0.999027 |
Target: 5'- -uUGAUCAUggagaagagGUCCAGcGACgaGUCCGUc -3' miRNA: 3'- cuAUUAGUG---------CAGGUU-CUGgaCAGGCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 194769 | 0.67 | 0.999027 |
Target: 5'- ----cUCGCGccgucCCGAGACCggGUCgCGCa -3' miRNA: 3'- cuauuAGUGCa----GGUUCUGGa-CAG-GCG- -5' |
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15947 | 3' | -49.5 | NC_004065.1 | + | 90060 | 0.69 | 0.994644 |
Target: 5'- --cAGUa--GUCCAGGACCUGcCCGa -3' miRNA: 3'- cuaUUAgugCAGGUUCUGGACaGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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