miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15949 3' -48.7 NC_004065.1 + 203972 0.66 0.999905
Target:  5'- aAAUcgGCUCGCgGUUCGAcgccGCGUGCGa -3'
miRNA:   3'- gUUGuaUGGGUG-CGAGUUu---UGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 8001 0.66 0.999905
Target:  5'- gAACA-ACCCgACGUUCAAGagGCGcUGCa -3'
miRNA:   3'- gUUGUaUGGG-UGCGAGUUU--UGC-ACGc -5'
15949 3' -48.7 NC_004065.1 + 151514 0.66 0.999905
Target:  5'- cCGACAUcgccAUCCGCGCcCuGGACG-GCGg -3'
miRNA:   3'- -GUUGUA----UGGGUGCGaGuUUUGCaCGC- -5'
15949 3' -48.7 NC_004065.1 + 133138 0.66 0.999905
Target:  5'- aCGGCGUauGCCCACGUg-AGAACGcuuUGUGa -3'
miRNA:   3'- -GUUGUA--UGGGUGCGagUUUUGC---ACGC- -5'
15949 3' -48.7 NC_004065.1 + 185569 0.66 0.999877
Target:  5'- ---uGUGCCCAccgcguCGUUCAAGACGaacGCGg -3'
miRNA:   3'- guugUAUGGGU------GCGAGUUUUGCa--CGC- -5'
15949 3' -48.7 NC_004065.1 + 751 0.66 0.999877
Target:  5'- cCAGCGUGCCgcgucgcggguuCGCGCUCGAccuuCGaGCGu -3'
miRNA:   3'- -GUUGUAUGG------------GUGCGAGUUuu--GCaCGC- -5'
15949 3' -48.7 NC_004065.1 + 205257 0.66 0.999877
Target:  5'- gCGAgAUACCCGCGC-CGGccAACGggggGCc -3'
miRNA:   3'- -GUUgUAUGGGUGCGaGUU--UUGCa---CGc -5'
15949 3' -48.7 NC_004065.1 + 183904 0.66 0.999877
Target:  5'- uGAgGUGCgCCACGCU--GAugGUGUa -3'
miRNA:   3'- gUUgUAUG-GGUGCGAguUUugCACGc -5'
15949 3' -48.7 NC_004065.1 + 145868 0.66 0.999877
Target:  5'- aCGGCGUcgagauCCUugGCUCccggagaugggAGAAUGUGCGc -3'
miRNA:   3'- -GUUGUAu-----GGGugCGAG-----------UUUUGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 138904 0.66 0.999841
Target:  5'- aCGAC---CCCGCGCUCA--GCGagGCGc -3'
miRNA:   3'- -GUUGuauGGGUGCGAGUuuUGCa-CGC- -5'
15949 3' -48.7 NC_004065.1 + 152334 0.66 0.999841
Target:  5'- gAACAcgggGCCCACGCUCGGcucgaucuccGAC-UGCc -3'
miRNA:   3'- gUUGUa---UGGGUGCGAGUU----------UUGcACGc -5'
15949 3' -48.7 NC_004065.1 + 77100 0.66 0.999841
Target:  5'- aGAUcgACUCGCGCUgCAAccUGUGCGc -3'
miRNA:   3'- gUUGuaUGGGUGCGA-GUUuuGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 36242 0.66 0.999841
Target:  5'- -cGCuugGCCUucCGCUCGGAGCG-GCGc -3'
miRNA:   3'- guUGua-UGGGu-GCGAGUUUUGCaCGC- -5'
15949 3' -48.7 NC_004065.1 + 170395 0.66 0.999841
Target:  5'- gGACcgugucgACCgACGCggucaUCAAGAUGUGCGu -3'
miRNA:   3'- gUUGua-----UGGgUGCG-----AGUUUUGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 137833 0.66 0.999841
Target:  5'- -----gGCCCGCGuCUCGuuucGCGUGUGu -3'
miRNA:   3'- guuguaUGGGUGC-GAGUuu--UGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 175715 0.66 0.999797
Target:  5'- gAAgGUcgaCCACGCUUAuagucuGCGUGCGa -3'
miRNA:   3'- gUUgUAug-GGUGCGAGUuu----UGCACGC- -5'
15949 3' -48.7 NC_004065.1 + 205527 0.66 0.999797
Target:  5'- -----gGCCgGCGCUCAGGGcCGgcgGCGg -3'
miRNA:   3'- guuguaUGGgUGCGAGUUUU-GCa--CGC- -5'
15949 3' -48.7 NC_004065.1 + 187424 0.66 0.999797
Target:  5'- gAGCGcACCCcagcGCGCUCcuGAAGCaUGCGg -3'
miRNA:   3'- gUUGUaUGGG----UGCGAG--UUUUGcACGC- -5'
15949 3' -48.7 NC_004065.1 + 191890 0.66 0.999797
Target:  5'- uCAGCAUGCgCACGC-CGAAGucCG-GCGc -3'
miRNA:   3'- -GUUGUAUGgGUGCGaGUUUU--GCaCGC- -5'
15949 3' -48.7 NC_004065.1 + 131180 0.66 0.999797
Target:  5'- gCAGCGcACCCACGCaUCcu-GCuUGCGu -3'
miRNA:   3'- -GUUGUaUGGGUGCG-AGuuuUGcACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.