miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 3' -57.8 NC_001347.2 + 26055 0.66 0.94099
Target:  5'- cGGGCGCUG-CGGUcCCGacauggagacagUUUCCACgCAg -3'
miRNA:   3'- -CCUGCGGCaGCCAuGGC------------AGAGGUG-GU- -5'
1595 3' -57.8 NC_001347.2 + 2223 0.66 0.94099
Target:  5'- cGGCGgCGUCGGggACCGUgCcgCgCGCCAu -3'
miRNA:   3'- cCUGCgGCAGCCa-UGGCA-Ga-G-GUGGU- -5'
1595 3' -57.8 NC_001347.2 + 188462 0.66 0.94099
Target:  5'- aGGGCGCCGcuagUGGUGgCGgugUUUCCAgCAu -3'
miRNA:   3'- -CCUGCGGCa---GCCAUgGC---AGAGGUgGU- -5'
1595 3' -57.8 NC_001347.2 + 112046 0.66 0.94099
Target:  5'- aGGAagaagaaccUGCCGUCGaGggcccgGCCGUUgCCGCCu -3'
miRNA:   3'- -CCU---------GCGGCAGC-Ca-----UGGCAGaGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 196346 0.66 0.94099
Target:  5'- uGuCGCCcuccgCGGUGgCGUC-CCACCAu -3'
miRNA:   3'- cCuGCGGca---GCCAUgGCAGaGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 6222 0.66 0.936488
Target:  5'- -aGCGCCG--GGUACuguggcgcaguCGUUUCCACCAg -3'
miRNA:   3'- ccUGCGGCagCCAUG-----------GCAGAGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 134178 0.66 0.936488
Target:  5'- aGGGCGCacuuUgGGUGCgGUCcUCCAUCGc -3'
miRNA:   3'- -CCUGCGgc--AgCCAUGgCAG-AGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 116669 0.66 0.936488
Target:  5'- cGGCGCCGcC---GCCGUCgCCACCu -3'
miRNA:   3'- cCUGCGGCaGccaUGGCAGaGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 117606 0.66 0.931773
Target:  5'- -uGCGCCaGaUGGUACacuCGUUUCCACCGu -3'
miRNA:   3'- ccUGCGG-CaGCCAUG---GCAGAGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 1974 0.66 0.926844
Target:  5'- gGGACGgCGgCGGggacgaCGUC-CCGCCAg -3'
miRNA:   3'- -CCUGCgGCaGCCaug---GCAGaGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 154915 0.66 0.923784
Target:  5'- -aGCGCCGgCGGguccuacguugcuacUGCCGgcgacggCUCCGCCGc -3'
miRNA:   3'- ccUGCGGCaGCC---------------AUGGCa------GAGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 208695 0.66 0.921702
Target:  5'- uGGCGCagGUC-GUGCaCGUCggCCACCAg -3'
miRNA:   3'- cCUGCGg-CAGcCAUG-GCAGa-GGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 190183 0.66 0.921702
Target:  5'- -aACGCCGUCGGacGCCGUgcagaacaUCCuCCAa -3'
miRNA:   3'- ccUGCGGCAGCCa-UGGCAg-------AGGuGGU- -5'
1595 3' -57.8 NC_001347.2 + 39375 0.66 0.916345
Target:  5'- uGGACGCCGUggccCGGcgUCGUCguagCCGCa- -3'
miRNA:   3'- -CCUGCGGCA----GCCauGGCAGa---GGUGgu -5'
1595 3' -57.8 NC_001347.2 + 17109 0.66 0.916345
Target:  5'- cGGccGCGCCauGcCGGUcguccGCCGUCggCCGCCGc -3'
miRNA:   3'- -CC--UGCGG--CaGCCA-----UGGCAGa-GGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 156640 0.66 0.916345
Target:  5'- cGGCGCCGcugcCGGgccucgGCCGcCgCCGCCAc -3'
miRNA:   3'- cCUGCGGCa---GCCa-----UGGCaGaGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 81638 0.67 0.910776
Target:  5'- cGGCGCCGccgccggccUCGGUACCGaagacCUgCCACUc -3'
miRNA:   3'- cCUGCGGC---------AGCCAUGGCa----GA-GGUGGu -5'
1595 3' -57.8 NC_001347.2 + 2277 0.67 0.904995
Target:  5'- uGGGCGCCGUguucgGGUACUG-C-CCGCUg -3'
miRNA:   3'- -CCUGCGGCAg----CCAUGGCaGaGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 128989 0.67 0.904995
Target:  5'- aGAUaCCGUCGGcGCCGcCUCgCAUCAu -3'
miRNA:   3'- cCUGcGGCAGCCaUGGCaGAG-GUGGU- -5'
1595 3' -57.8 NC_001347.2 + 156884 0.67 0.904995
Target:  5'- cGACccaucaCCGUCauccGCCGUCUCCGCCGu -3'
miRNA:   3'- cCUGc-----GGCAGcca-UGGCAGAGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.