miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 3' -57.8 NC_001347.2 + 175294 1.1 0.003175
Target:  5'- cGGACGCCGUCGGUACCGUCUCCACCAc -3'
miRNA:   3'- -CCUGCGGCAGCCAUGGCAGAGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 94336 0.75 0.465423
Target:  5'- cGGCGUCGUCGGagGCCGgugcgucguccucaUCUCCGCCu -3'
miRNA:   3'- cCUGCGGCAGCCa-UGGC--------------AGAGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 24135 0.75 0.476951
Target:  5'- --cCGCCG-CGccgGCCGUCUCCACCAa -3'
miRNA:   3'- ccuGCGGCaGCca-UGGCAGAGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 18066 0.74 0.531846
Target:  5'- uGGAaGCCGUCGGUguacuaGCCGUgCgUCCACCc -3'
miRNA:   3'- -CCUgCGGCAGCCA------UGGCA-G-AGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 174244 0.72 0.6758
Target:  5'- cGGACGaccuccgCGUCGGUcGCCGcCUCCGCg- -3'
miRNA:   3'- -CCUGCg------GCAGCCA-UGGCaGAGGUGgu -5'
1595 3' -57.8 NC_001347.2 + 192161 0.71 0.713913
Target:  5'- cGGCGUCG-CGGUuuccGCCGUCUCCggaugagcgGCCGc -3'
miRNA:   3'- cCUGCGGCaGCCA----UGGCAGAGG---------UGGU- -5'
1595 3' -57.8 NC_001347.2 + 150197 0.71 0.723305
Target:  5'- aGGACGCCGUauUGGUGCgCGaUCUguucaaCACCAu -3'
miRNA:   3'- -CCUGCGGCA--GCCAUG-GC-AGAg-----GUGGU- -5'
1595 3' -57.8 NC_001347.2 + 105159 0.7 0.741869
Target:  5'- uGACGCCGcgccCGGUGCagacguuguuCGUCUCUGCCu -3'
miRNA:   3'- cCUGCGGCa---GCCAUG----------GCAGAGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 210143 0.7 0.760091
Target:  5'- -aGCGCCGUCuuucGUGCCGUCgCCGCa- -3'
miRNA:   3'- ccUGCGGCAGc---CAUGGCAGaGGUGgu -5'
1595 3' -57.8 NC_001347.2 + 147869 0.69 0.820271
Target:  5'- uGGGCGCCG-CGGgaaagGCCGUUggcguaGCCAu -3'
miRNA:   3'- -CCUGCGGCaGCCa----UGGCAGagg---UGGU- -5'
1595 3' -57.8 NC_001347.2 + 20429 0.69 0.826718
Target:  5'- aGGuGCGCCGcagCGGcuuugugccgagACCGUCgCCACCAu -3'
miRNA:   3'- -CC-UGCGGCa--GCCa-----------UGGCAGaGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 38196 0.69 0.836196
Target:  5'- cGACGCCGcCGGacccgccaucGCUGUCgaacCCACCAu -3'
miRNA:   3'- cCUGCGGCaGCCa---------UGGCAGa---GGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 193479 0.68 0.851456
Target:  5'- uGGACG-CGUaCGGcGCCGUgUUCGCCu -3'
miRNA:   3'- -CCUGCgGCA-GCCaUGGCAgAGGUGGu -5'
1595 3' -57.8 NC_001347.2 + 176461 0.68 0.858821
Target:  5'- uGACGCuCGaCGuGUACUGUUgCCGCCAg -3'
miRNA:   3'- cCUGCG-GCaGC-CAUGGCAGaGGUGGU- -5'
1595 3' -57.8 NC_001347.2 + 150633 0.68 0.866004
Target:  5'- cGGCGCCGgCGGUACUgcggcgGUUUCgUACCAg -3'
miRNA:   3'- cCUGCGGCaGCCAUGG------CAGAG-GUGGU- -5'
1595 3' -57.8 NC_001347.2 + 165116 0.68 0.866004
Target:  5'- cGGugGUCGUUGucgcUGCCGUgUCCGCg- -3'
miRNA:   3'- -CCugCGGCAGCc---AUGGCAgAGGUGgu -5'
1595 3' -57.8 NC_001347.2 + 170071 0.68 0.87092
Target:  5'- cGGCGUCGUCaGUuggcgucccgagucGCCGUCUCCcgacggcacGCCGu -3'
miRNA:   3'- cCUGCGGCAGcCA--------------UGGCAGAGG---------UGGU- -5'
1595 3' -57.8 NC_001347.2 + 181240 0.68 0.872998
Target:  5'- uGGACGCCGUC--UACCGU-UUgGCCGa -3'
miRNA:   3'- -CCUGCGGCAGccAUGGCAgAGgUGGU- -5'
1595 3' -57.8 NC_001347.2 + 166856 0.67 0.879799
Target:  5'- aGACGCaaUCGcGUACCGUCUUaaaaACCGc -3'
miRNA:   3'- cCUGCGgcAGC-CAUGGCAGAGg---UGGU- -5'
1595 3' -57.8 NC_001347.2 + 38392 0.67 0.879799
Target:  5'- --cCGCCGgCGGccuCCGUCUCCguGCCGc -3'
miRNA:   3'- ccuGCGGCaGCCau-GGCAGAGG--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.