miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 103241 0.65 0.879479
Target:  5'- uGCCGacgagcCGCUGUUugUggacgauuaccguGCCACCGACGa -3'
miRNA:   3'- -UGGCa-----GCGGCAGugA-------------CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 68050 0.66 0.866214
Target:  5'- cCCGcCGCCGcCACcGCCACCa---- -3'
miRNA:   3'- uGGCaGCGGCaGUGaCGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 127799 0.66 0.858951
Target:  5'- cACCGUCGCCGUaCACcccaGCguuuuacgCGCCGugGc -3'
miRNA:   3'- -UGGCAGCGGCA-GUGa---CG--------GUGGCugUa -5'
1595 5' -59.1 NC_001347.2 + 222751 0.66 0.858951
Target:  5'- cGCUGcCGCgGcCAUUGCCGCCGcCGc -3'
miRNA:   3'- -UGGCaGCGgCaGUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 85341 0.66 0.858951
Target:  5'- cGCCGccagCGCCGUCGCccgcgGCUagGCCGAgAc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGa----CGG--UGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 4872 0.66 0.858214
Target:  5'- cGCCGUCGCaucgcccCGaggCGCUGCUcugaagccaaguGCCGACGg -3'
miRNA:   3'- -UGGCAGCG-------GCa--GUGACGG------------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 96396 0.66 0.8515
Target:  5'- gGCCGUgCGCa-UCGcCUGCCucauCCGACAg -3'
miRNA:   3'- -UGGCA-GCGgcAGU-GACGGu---GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 89731 0.66 0.8515
Target:  5'- cACCaccCGCCGUCGucGCCugCGGCGUc -3'
miRNA:   3'- -UGGca-GCGGCAGUgaCGGugGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 208076 0.66 0.8515
Target:  5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3'
miRNA:   3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 17708 0.66 0.843867
Target:  5'- uCCGacUCGCUGUCgagacgGCU-CCGCCGGCAUg -3'
miRNA:   3'- uGGC--AGCGGCAG------UGAcGGUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 114792 0.66 0.843867
Target:  5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3'
miRNA:   3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 198450 0.66 0.843867
Target:  5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3'
miRNA:   3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 26048 0.67 0.836057
Target:  5'- -aCGcCGCCGggCGCUGCgGucCCGACAUg -3'
miRNA:   3'- ugGCaGCGGCa-GUGACGgU--GGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 5508 0.67 0.836057
Target:  5'- cGCCGUUcCCGUCgACUGCaaaACCGcCAg -3'
miRNA:   3'- -UGGCAGcGGCAG-UGACGg--UGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 25347 0.67 0.836057
Target:  5'- gACUGUUGCCGcguggCGCUGCaCACCuauGGCGc -3'
miRNA:   3'- -UGGCAGCGGCa----GUGACG-GUGG---CUGUa -5'
1595 5' -59.1 NC_001347.2 + 129648 0.67 0.835267
Target:  5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3'
miRNA:   3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5'
1595 5' -59.1 NC_001347.2 + 148610 0.67 0.828078
Target:  5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3'
miRNA:   3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 101689 0.67 0.819935
Target:  5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3'
miRNA:   3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 113456 0.67 0.819935
Target:  5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3'
miRNA:   3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5'
1595 5' -59.1 NC_001347.2 + 159441 0.67 0.819935
Target:  5'- uCCGUCGUCGUCuGCggccgcgGCCGCuCGAUg- -3'
miRNA:   3'- uGGCAGCGGCAG-UGa------CGGUG-GCUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.