miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 62770 0.7 0.644271
Target:  5'- gGCCGacccCGCCGUUGCgGCCGCCGcucACAg -3'
miRNA:   3'- -UGGCa---GCGGCAGUGaCGGUGGC---UGUa -5'
1595 5' -59.1 NC_001347.2 + 38448 0.7 0.634476
Target:  5'- cGCCGUCcCCGUCGCcgGCCccGCCGcGCAg -3'
miRNA:   3'- -UGGCAGcGGCAGUGa-CGG--UGGC-UGUa -5'
1595 5' -59.1 NC_001347.2 + 172053 0.7 0.644271
Target:  5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3'
miRNA:   3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 142880 0.7 0.644271
Target:  5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3'
miRNA:   3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 38235 0.7 0.654059
Target:  5'- cACCGUCGgCGcCGCUGCUGCUGccGCGUc -3'
miRNA:   3'- -UGGCAGCgGCaGUGACGGUGGC--UGUA- -5'
1595 5' -59.1 NC_001347.2 + 116672 0.7 0.654059
Target:  5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3'
miRNA:   3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 199595 0.7 0.654059
Target:  5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3'
miRNA:   3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 109808 0.7 0.66383
Target:  5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3'
miRNA:   3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 195385 0.7 0.673577
Target:  5'- cGCCGUCGCuccgCGUCGCUucGCCGCCa---- -3'
miRNA:   3'- -UGGCAGCG----GCAGUGA--CGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 81545 0.71 0.572994
Target:  5'- cACCGUCGCCGUCgucacguggcagcgGCggcaacaGCCAgCGACGa -3'
miRNA:   3'- -UGGCAGCGGCAG--------------UGa------CGGUgGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 200975 0.71 0.566229
Target:  5'- uACCGggGCCGUCuAC-GCCugCGACGUg -3'
miRNA:   3'- -UGGCagCGGCAG-UGaCGGugGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 81987 0.71 0.585606
Target:  5'- cACUGcUCGUCgGUCACUGCCacggccacgaaACCGACAg -3'
miRNA:   3'- -UGGC-AGCGG-CAGUGACGG-----------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 63106 0.71 0.585606
Target:  5'- cGCCGUgGCCGcCGCgGCCGCCG-Cu- -3'
miRNA:   3'- -UGGCAgCGGCaGUGaCGGUGGCuGua -5'
1595 5' -59.1 NC_001347.2 + 210157 0.71 0.605105
Target:  5'- uGCCGUCGCCG-CACUGCguucuCACUcGCGUc -3'
miRNA:   3'- -UGGCAGCGGCaGUGACG-----GUGGcUGUA- -5'
1595 5' -59.1 NC_001347.2 + 17331 0.71 0.605105
Target:  5'- cGCgGUUGCCG-CGCguaugGCCGCCGGCc- -3'
miRNA:   3'- -UGgCAGCGGCaGUGa----CGGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 184508 0.71 0.585606
Target:  5'- cGCCG-CGCCGUgugagaguucCAggGCCGCCGACAc -3'
miRNA:   3'- -UGGCaGCGGCA----------GUgaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 188861 0.71 0.614886
Target:  5'- uGCUGgCGCCGgCGCUGCCauccucacGCCGACGc -3'
miRNA:   3'- -UGGCaGCGGCaGUGACGG--------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 68175 0.72 0.546067
Target:  5'- gGCCGUCGCgaGUCccgccGCUGCCACCcagcgagGACAc -3'
miRNA:   3'- -UGGCAGCGg-CAG-----UGACGGUGG-------CUGUa -5'
1595 5' -59.1 NC_001347.2 + 178777 0.72 0.541299
Target:  5'- uGCCGUUGcCCGUgucggaagaagauccCGCUGCCGCCGcCAc -3'
miRNA:   3'- -UGGCAGC-GGCA---------------GUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 92387 0.72 0.546067
Target:  5'- cGCCGgCGCCGccuagcgUCACUGCCuuCUGACAg -3'
miRNA:   3'- -UGGCaGCGGC-------AGUGACGGu-GGCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.