Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 109808 | 0.7 | 0.66383 |
Target: 5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3' miRNA: 3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 62770 | 0.7 | 0.644271 |
Target: 5'- gGCCGacccCGCCGUUGCgGCCGCCGcucACAg -3' miRNA: 3'- -UGGCa---GCGGCAGUGaCGGUGGC---UGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 199595 | 0.7 | 0.654059 |
Target: 5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3' miRNA: 3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 116672 | 0.7 | 0.654059 |
Target: 5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3' miRNA: 3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 172053 | 0.7 | 0.644271 |
Target: 5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3' miRNA: 3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 38235 | 0.7 | 0.654059 |
Target: 5'- cACCGUCGgCGcCGCUGCUGCUGccGCGUc -3' miRNA: 3'- -UGGCAGCgGCaGUGACGGUGGC--UGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 38448 | 0.7 | 0.634476 |
Target: 5'- cGCCGUCcCCGUCGCcgGCCccGCCGcGCAg -3' miRNA: 3'- -UGGCAGcGGCAGUGa-CGG--UGGC-UGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 142880 | 0.7 | 0.644271 |
Target: 5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3' miRNA: 3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 168353 | 0.69 | 0.712181 |
Target: 5'- cGCCGcCGCCG-CGgUGCCGCCG-Cu- -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCuGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 170370 | 0.69 | 0.73114 |
Target: 5'- aGCCGgCGCgGgaGCUGCCGuCCGACAg -3' miRNA: 3'- -UGGCaGCGgCagUGACGGU-GGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 63143 | 0.69 | 0.702604 |
Target: 5'- cCCGUCGCCGcaaaccccgUCAUgcccGCCACCGcCAc -3' miRNA: 3'- uGGCAGCGGC---------AGUGa---CGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 75773 | 0.69 | 0.683294 |
Target: 5'- cGCCGUC-UCGUCGUUGCCGCCGGu-- -3' miRNA: 3'- -UGGCAGcGGCAGUGACGGUGGCUgua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 85853 | 0.69 | 0.692972 |
Target: 5'- gACCGagGCCGUCGCg--CACCGGCu- -3' miRNA: 3'- -UGGCagCGGCAGUGacgGUGGCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 131728 | 0.69 | 0.692972 |
Target: 5'- gACCG--GCCGUCGCcGCCGCCG-CGg -3' miRNA: 3'- -UGGCagCGGCAGUGaCGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 86000 | 0.69 | 0.703564 |
Target: 5'- aACCGUcCGCCGcCGCggcgcccggcagacaGCCGCUGACGa -3' miRNA: 3'- -UGGCA-GCGGCaGUGa--------------CGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 64855 | 0.68 | 0.758968 |
Target: 5'- cGCCGUCaG-CGUCGCUcuaccGCCGCCGAgAa -3' miRNA: 3'- -UGGCAG-CgGCAGUGA-----CGGUGGCUgUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 135602 | 0.68 | 0.758968 |
Target: 5'- uACCGUCGUCGUCGgCcGaCCGCCG-CGa -3' miRNA: 3'- -UGGCAGCGGCAGU-GaC-GGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 56439 | 0.68 | 0.758968 |
Target: 5'- cUCGUUGCUGcCGCgcgcGCCACCaGACAUa -3' miRNA: 3'- uGGCAGCGGCaGUGa---CGGUGG-CUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 208435 | 0.68 | 0.758968 |
Target: 5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3' miRNA: 3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 130150 | 0.68 | 0.758968 |
Target: 5'- cGCCGUCGCgCGUUGCaaGUCACCGGu-- -3' miRNA: 3'- -UGGCAGCG-GCAGUGa-CGGUGGCUgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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