Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 1595 | 5' | -59.1 | NC_001347.2 | + | 4872 | 0.66 | 0.858214 |
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Target: 5'- cGCCGUCGCaucgcccCGaggCGCUGCUcugaagccaaguGCCGACGg -3' miRNA: 3'- -UGGCAGCG-------GCa--GUGACGG------------UGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 96396 | 0.66 | 0.8515 |
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Target: 5'- gGCCGUgCGCa-UCGcCUGCCucauCCGACAg -3' miRNA: 3'- -UGGCA-GCGgcAGU-GACGGu---GGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 89731 | 0.66 | 0.8515 |
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Target: 5'- cACCaccCGCCGUCGucGCCugCGGCGUc -3' miRNA: 3'- -UGGca-GCGGCAGUgaCGGugGCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 208076 | 0.66 | 0.8515 |
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Target: 5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3' miRNA: 3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 198450 | 0.66 | 0.843867 |
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Target: 5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 114792 | 0.66 | 0.843867 |
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Target: 5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3' miRNA: 3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 17708 | 0.66 | 0.843867 |
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Target: 5'- uCCGacUCGCUGUCgagacgGCU-CCGCCGGCAUg -3' miRNA: 3'- uGGC--AGCGGCAG------UGAcGGUGGCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 103241 | 0.65 | 0.879479 |
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Target: 5'- uGCCGacgagcCGCUGUUugUggacgauuaccguGCCACCGACGa -3' miRNA: 3'- -UGGCa-----GCGGCAGugA-------------CGGUGGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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