miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 175328 1.05 0.003944
Target:  5'- cACCGUCGCCGUCACUGCCACCGACAUg -3'
miRNA:   3'- -UGGCAGCGGCAGUGACGGUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 178889 0.83 0.130835
Target:  5'- cUCGUCGCCGcCGCUGCCGCCGGuCGUg -3'
miRNA:   3'- uGGCAGCGGCaGUGACGGUGGCU-GUA- -5'
1595 5' -59.1 NC_001347.2 + 88350 0.79 0.227975
Target:  5'- aACCGUCGCCGcuggcggCGCUGCCGCgagaCGACGUg -3'
miRNA:   3'- -UGGCAGCGGCa------GUGACGGUG----GCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 191965 0.78 0.261824
Target:  5'- cGCuCGUCGCUGUCGCcGCCACCG-CAg -3'
miRNA:   3'- -UG-GCAGCGGCAGUGaCGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 196953 0.77 0.306352
Target:  5'- cGCCGggGCUGUCGCgcGCCGCCGACGc -3'
miRNA:   3'- -UGGCagCGGCAGUGa-CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 67357 0.76 0.341569
Target:  5'- aGCCGcCGCCGUCGCcGCCGCCucgGACu- -3'
miRNA:   3'- -UGGCaGCGGCAGUGaCGGUGG---CUGua -5'
1595 5' -59.1 NC_001347.2 + 17131 0.74 0.428877
Target:  5'- cGCCGUCgGCCGcCGCccaUGCCACgCGACGa -3'
miRNA:   3'- -UGGCAG-CGGCaGUG---ACGGUG-GCUGUa -5'
1595 5' -59.1 NC_001347.2 + 178777 0.72 0.541299
Target:  5'- uGCCGUUGcCCGUgucggaagaagauccCGCUGCCGCCGcCAc -3'
miRNA:   3'- -UGGCAGC-GGCA---------------GUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 68175 0.72 0.546067
Target:  5'- gGCCGUCGCgaGUCccgccGCUGCCACCcagcgagGACAc -3'
miRNA:   3'- -UGGCAGCGg-CAG-----UGACGGUGG-------CUGUa -5'
1595 5' -59.1 NC_001347.2 + 92387 0.72 0.546067
Target:  5'- cGCCGgCGCCGccuagcgUCACUGCCuuCUGACAg -3'
miRNA:   3'- -UGGCaGCGGC-------AGUGACGGu-GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 121229 0.72 0.547022
Target:  5'- -aCGUCGUCGUgGacGCCACCGACAg -3'
miRNA:   3'- ugGCAGCGGCAgUgaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 200975 0.71 0.566229
Target:  5'- uACCGggGCCGUCuAC-GCCugCGACGUg -3'
miRNA:   3'- -UGGCagCGGCAG-UGaCGGugGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 81545 0.71 0.572994
Target:  5'- cACCGUCGCCGUCgucacguggcagcgGCggcaacaGCCAgCGACGa -3'
miRNA:   3'- -UGGCAGCGGCAG--------------UGa------CGGUgGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 184508 0.71 0.585606
Target:  5'- cGCCG-CGCCGUgugagaguucCAggGCCGCCGACAc -3'
miRNA:   3'- -UGGCaGCGGCA----------GUgaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 63106 0.71 0.585606
Target:  5'- cGCCGUgGCCGcCGCgGCCGCCG-Cu- -3'
miRNA:   3'- -UGGCAgCGGCaGUGaCGGUGGCuGua -5'
1595 5' -59.1 NC_001347.2 + 81987 0.71 0.585606
Target:  5'- cACUGcUCGUCgGUCACUGCCacggccacgaaACCGACAg -3'
miRNA:   3'- -UGGC-AGCGG-CAGUGACGG-----------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 210157 0.71 0.605105
Target:  5'- uGCCGUCGCCG-CACUGCguucuCACUcGCGUc -3'
miRNA:   3'- -UGGCAGCGGCaGUGACG-----GUGGcUGUA- -5'
1595 5' -59.1 NC_001347.2 + 17331 0.71 0.605105
Target:  5'- cGCgGUUGCCG-CGCguaugGCCGCCGGCc- -3'
miRNA:   3'- -UGgCAGCGGCaGUGa----CGGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 188861 0.71 0.614886
Target:  5'- uGCUGgCGCCGgCGCUGCCauccucacGCCGACGc -3'
miRNA:   3'- -UGGCaGCGGCaGUGACGG--------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 38448 0.7 0.634476
Target:  5'- cGCCGUCcCCGUCGCcgGCCccGCCGcGCAg -3'
miRNA:   3'- -UGGCAGcGGCAGUGa-CGG--UGGC-UGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.