miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 172053 0.7 0.644271
Target:  5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3'
miRNA:   3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 62770 0.7 0.644271
Target:  5'- gGCCGacccCGCCGUUGCgGCCGCCGcucACAg -3'
miRNA:   3'- -UGGCa---GCGGCAGUGaCGGUGGC---UGUa -5'
1595 5' -59.1 NC_001347.2 + 142880 0.7 0.644271
Target:  5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3'
miRNA:   3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 38235 0.7 0.654059
Target:  5'- cACCGUCGgCGcCGCUGCUGCUGccGCGUc -3'
miRNA:   3'- -UGGCAGCgGCaGUGACGGUGGC--UGUA- -5'
1595 5' -59.1 NC_001347.2 + 116672 0.7 0.654059
Target:  5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3'
miRNA:   3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 199595 0.7 0.654059
Target:  5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3'
miRNA:   3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 109808 0.7 0.66383
Target:  5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3'
miRNA:   3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 195385 0.7 0.673577
Target:  5'- cGCCGUCGCuccgCGUCGCUucGCCGCCa---- -3'
miRNA:   3'- -UGGCAGCG----GCAGUGA--CGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 75773 0.69 0.683294
Target:  5'- cGCCGUC-UCGUCGUUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCAGcGGCAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 85853 0.69 0.692972
Target:  5'- gACCGagGCCGUCGCg--CACCGGCu- -3'
miRNA:   3'- -UGGCagCGGCAGUGacgGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 131728 0.69 0.692972
Target:  5'- gACCG--GCCGUCGCcGCCGCCG-CGg -3'
miRNA:   3'- -UGGCagCGGCAGUGaCGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 63143 0.69 0.702604
Target:  5'- cCCGUCGCCGcaaaccccgUCAUgcccGCCACCGcCAc -3'
miRNA:   3'- uGGCAGCGGC---------AGUGa---CGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 86000 0.69 0.703564
Target:  5'- aACCGUcCGCCGcCGCggcgcccggcagacaGCCGCUGACGa -3'
miRNA:   3'- -UGGCA-GCGGCaGUGa--------------CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 168353 0.69 0.712181
Target:  5'- cGCCGcCGCCG-CGgUGCCGCCG-Cu- -3'
miRNA:   3'- -UGGCaGCGGCaGUgACGGUGGCuGua -5'
1595 5' -59.1 NC_001347.2 + 170370 0.69 0.73114
Target:  5'- aGCCGgCGCgGgaGCUGCCGuCCGACAg -3'
miRNA:   3'- -UGGCaGCGgCagUGACGGU-GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 115177 0.68 0.749784
Target:  5'- gUgGUUGUCGUUACcacaacgGCCGCCGACGUc -3'
miRNA:   3'- uGgCAGCGGCAGUGa------CGGUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 38404 0.68 0.749784
Target:  5'- uCCGUCuCCGUgcCGCUcGCCGCUGGCGg -3'
miRNA:   3'- uGGCAGcGGCA--GUGA-CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 135602 0.68 0.758968
Target:  5'- uACCGUCGUCGUCGgCcGaCCGCCG-CGa -3'
miRNA:   3'- -UGGCAGCGGCAGU-GaC-GGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 56439 0.68 0.758968
Target:  5'- cUCGUUGCUGcCGCgcgcGCCACCaGACAUa -3'
miRNA:   3'- uGGCAGCGGCaGUGa---CGGUGG-CUGUA- -5'
1595 5' -59.1 NC_001347.2 + 208435 0.68 0.758968
Target:  5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3'
miRNA:   3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.