Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 56439 | 0.68 | 0.758968 |
Target: 5'- cUCGUUGCUGcCGCgcgcGCCACCaGACAUa -3' miRNA: 3'- uGGCAGCGGCaGUGa---CGGUGG-CUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 208435 | 0.68 | 0.758968 |
Target: 5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3' miRNA: 3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 130150 | 0.68 | 0.758968 |
Target: 5'- cGCCGUCGCgCGUUGCaaGUCACCGGu-- -3' miRNA: 3'- -UGGCAGCG-GCAGUGa-CGGUGGCUgua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 28003 | 0.68 | 0.76805 |
Target: 5'- gUCGcCGCCGUCACcaCCGCCGAUc- -3' miRNA: 3'- uGGCaGCGGCAGUGacGGUGGCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 192124 | 0.68 | 0.784992 |
Target: 5'- cGCCGccacCGCCGUCGUUGCCGguccccguuuccuCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGGCAGUGACGGU-------------GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 463 | 0.68 | 0.785872 |
Target: 5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3' miRNA: 3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 229942 | 0.68 | 0.785872 |
Target: 5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3' miRNA: 3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 88221 | 0.68 | 0.785872 |
Target: 5'- cGCCGcucaCGCUguccgagggGUCGCUGCCGCCGGu-- -3' miRNA: 3'- -UGGCa---GCGG---------CAGUGACGGUGGCUgua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 159441 | 0.67 | 0.819935 |
Target: 5'- uCCGUCGUCGUCuGCggccgcgGCCGCuCGAUg- -3' miRNA: 3'- uGGCAGCGGCAG-UGa------CGGUG-GCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 113456 | 0.67 | 0.819935 |
Target: 5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3' miRNA: 3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 101689 | 0.67 | 0.819935 |
Target: 5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3' miRNA: 3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 148610 | 0.67 | 0.828078 |
Target: 5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 129648 | 0.67 | 0.835267 |
Target: 5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3' miRNA: 3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 26048 | 0.67 | 0.836057 |
Target: 5'- -aCGcCGCCGggCGCUGCgGucCCGACAUg -3' miRNA: 3'- ugGCaGCGGCa-GUGACGgU--GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 5508 | 0.67 | 0.836057 |
Target: 5'- cGCCGUUcCCGUCgACUGCaaaACCGcCAg -3' miRNA: 3'- -UGGCAGcGGCAG-UGACGg--UGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 25347 | 0.67 | 0.836057 |
Target: 5'- gACUGUUGCCGcguggCGCUGCaCACCuauGGCGc -3' miRNA: 3'- -UGGCAGCGGCa----GUGACG-GUGG---CUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 114792 | 0.66 | 0.843867 |
Target: 5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3' miRNA: 3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 198450 | 0.66 | 0.843867 |
Target: 5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 17708 | 0.66 | 0.843867 |
Target: 5'- uCCGacUCGCUGUCgagacgGCU-CCGCCGGCAUg -3' miRNA: 3'- uGGC--AGCGGCAG------UGAcGGUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 208076 | 0.66 | 0.8515 |
Target: 5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3' miRNA: 3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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