Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 195385 | 0.7 | 0.673577 |
Target: 5'- cGCCGUCGCuccgCGUCGCUucGCCGCCa---- -3' miRNA: 3'- -UGGCAGCG----GCAGUGA--CGGUGGcugua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 109808 | 0.7 | 0.66383 |
Target: 5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3' miRNA: 3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 38235 | 0.7 | 0.654059 |
Target: 5'- cACCGUCGgCGcCGCUGCUGCUGccGCGUc -3' miRNA: 3'- -UGGCAGCgGCaGUGACGGUGGC--UGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 116672 | 0.7 | 0.654059 |
Target: 5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3' miRNA: 3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 199595 | 0.7 | 0.654059 |
Target: 5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3' miRNA: 3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 142880 | 0.7 | 0.644271 |
Target: 5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3' miRNA: 3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 172053 | 0.7 | 0.644271 |
Target: 5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3' miRNA: 3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 62770 | 0.7 | 0.644271 |
Target: 5'- gGCCGacccCGCCGUUGCgGCCGCCGcucACAg -3' miRNA: 3'- -UGGCa---GCGGCAGUGaCGGUGGC---UGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 38448 | 0.7 | 0.634476 |
Target: 5'- cGCCGUCcCCGUCGCcgGCCccGCCGcGCAg -3' miRNA: 3'- -UGGCAGcGGCAGUGa-CGG--UGGC-UGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 188861 | 0.71 | 0.614886 |
Target: 5'- uGCUGgCGCCGgCGCUGCCauccucacGCCGACGc -3' miRNA: 3'- -UGGCaGCGGCaGUGACGG--------UGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 210157 | 0.71 | 0.605105 |
Target: 5'- uGCCGUCGCCG-CACUGCguucuCACUcGCGUc -3' miRNA: 3'- -UGGCAGCGGCaGUGACG-----GUGGcUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 17331 | 0.71 | 0.605105 |
Target: 5'- cGCgGUUGCCG-CGCguaugGCCGCCGGCc- -3' miRNA: 3'- -UGgCAGCGGCaGUGa----CGGUGGCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 184508 | 0.71 | 0.585606 |
Target: 5'- cGCCG-CGCCGUgugagaguucCAggGCCGCCGACAc -3' miRNA: 3'- -UGGCaGCGGCA----------GUgaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 63106 | 0.71 | 0.585606 |
Target: 5'- cGCCGUgGCCGcCGCgGCCGCCG-Cu- -3' miRNA: 3'- -UGGCAgCGGCaGUGaCGGUGGCuGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 81987 | 0.71 | 0.585606 |
Target: 5'- cACUGcUCGUCgGUCACUGCCacggccacgaaACCGACAg -3' miRNA: 3'- -UGGC-AGCGG-CAGUGACGG-----------UGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 81545 | 0.71 | 0.572994 |
Target: 5'- cACCGUCGCCGUCgucacguggcagcgGCggcaacaGCCAgCGACGa -3' miRNA: 3'- -UGGCAGCGGCAG--------------UGa------CGGUgGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 200975 | 0.71 | 0.566229 |
Target: 5'- uACCGggGCCGUCuAC-GCCugCGACGUg -3' miRNA: 3'- -UGGCagCGGCAG-UGaCGGugGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 121229 | 0.72 | 0.547022 |
Target: 5'- -aCGUCGUCGUgGacGCCACCGACAg -3' miRNA: 3'- ugGCAGCGGCAgUgaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 68175 | 0.72 | 0.546067 |
Target: 5'- gGCCGUCGCgaGUCccgccGCUGCCACCcagcgagGACAc -3' miRNA: 3'- -UGGCAGCGg-CAG-----UGACGGUGG-------CUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 92387 | 0.72 | 0.546067 |
Target: 5'- cGCCGgCGCCGccuagcgUCACUGCCuuCUGACAg -3' miRNA: 3'- -UGGCaGCGGC-------AGUGACGGu-GGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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