Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1595 | 5' | -59.1 | NC_001347.2 | + | 178777 | 0.72 | 0.541299 |
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Target: 5'- uGCCGUUGcCCGUgucggaagaagauccCGCUGCCGCCGcCAc -3' miRNA: 3'- -UGGCAGC-GGCA---------------GUGACGGUGGCuGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 17131 | 0.74 | 0.428877 |
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Target: 5'- cGCCGUCgGCCGcCGCccaUGCCACgCGACGa -3' miRNA: 3'- -UGGCAG-CGGCaGUG---ACGGUG-GCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 67357 | 0.76 | 0.341569 |
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Target: 5'- aGCCGcCGCCGUCGCcGCCGCCucgGACu- -3' miRNA: 3'- -UGGCaGCGGCAGUGaCGGUGG---CUGua -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 196953 | 0.77 | 0.306352 |
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Target: 5'- cGCCGggGCUGUCGCgcGCCGCCGACGc -3' miRNA: 3'- -UGGCagCGGCAGUGa-CGGUGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 191965 | 0.78 | 0.261824 |
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Target: 5'- cGCuCGUCGCUGUCGCcGCCACCG-CAg -3' miRNA: 3'- -UG-GCAGCGGCAGUGaCGGUGGCuGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 88350 | 0.79 | 0.227975 |
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Target: 5'- aACCGUCGCCGcuggcggCGCUGCCGCgagaCGACGUg -3' miRNA: 3'- -UGGCAGCGGCa------GUGACGGUG----GCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 178889 | 0.83 | 0.130835 |
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Target: 5'- cUCGUCGCCGcCGCUGCCGCCGGuCGUg -3' miRNA: 3'- uGGCAGCGGCaGUGACGGUGGCU-GUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 175328 | 1.05 | 0.003944 |
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Target: 5'- cACCGUCGCCGUCACUGCCACCGACAUg -3' miRNA: 3'- -UGGCAGCGGCAGUGACGGUGGCUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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