miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 75773 0.69 0.683294
Target:  5'- cGCCGUC-UCGUCGUUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCAGcGGCAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 81545 0.71 0.572994
Target:  5'- cACCGUCGCCGUCgucacguggcagcgGCggcaacaGCCAgCGACGa -3'
miRNA:   3'- -UGGCAGCGGCAG--------------UGa------CGGUgGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 81987 0.71 0.585606
Target:  5'- cACUGcUCGUCgGUCACUGCCacggccacgaaACCGACAg -3'
miRNA:   3'- -UGGC-AGCGG-CAGUGACGG-----------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 85341 0.66 0.858951
Target:  5'- cGCCGccagCGCCGUCGCccgcgGCUagGCCGAgAc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGa----CGG--UGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 85853 0.69 0.692972
Target:  5'- gACCGagGCCGUCGCg--CACCGGCu- -3'
miRNA:   3'- -UGGCagCGGCAGUGacgGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 86000 0.69 0.703564
Target:  5'- aACCGUcCGCCGcCGCggcgcccggcagacaGCCGCUGACGa -3'
miRNA:   3'- -UGGCA-GCGGCaGUGa--------------CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 88221 0.68 0.785872
Target:  5'- cGCCGcucaCGCUguccgagggGUCGCUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCa---GCGG---------CAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 88350 0.79 0.227975
Target:  5'- aACCGUCGCCGcuggcggCGCUGCCGCgagaCGACGUg -3'
miRNA:   3'- -UGGCAGCGGCa------GUGACGGUG----GCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 89731 0.66 0.8515
Target:  5'- cACCaccCGCCGUCGucGCCugCGGCGUc -3'
miRNA:   3'- -UGGca-GCGGCAGUgaCGGugGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 92387 0.72 0.546067
Target:  5'- cGCCGgCGCCGccuagcgUCACUGCCuuCUGACAg -3'
miRNA:   3'- -UGGCaGCGGC-------AGUGACGGu-GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 96396 0.66 0.8515
Target:  5'- gGCCGUgCGCa-UCGcCUGCCucauCCGACAg -3'
miRNA:   3'- -UGGCA-GCGgcAGU-GACGGu---GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 101689 0.67 0.819935
Target:  5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3'
miRNA:   3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 103241 0.65 0.879479
Target:  5'- uGCCGacgagcCGCUGUUugUggacgauuaccguGCCACCGACGa -3'
miRNA:   3'- -UGGCa-----GCGGCAGugA-------------CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 109808 0.7 0.66383
Target:  5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3'
miRNA:   3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 113456 0.67 0.819935
Target:  5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3'
miRNA:   3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5'
1595 5' -59.1 NC_001347.2 + 114792 0.66 0.843867
Target:  5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3'
miRNA:   3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 115177 0.68 0.749784
Target:  5'- gUgGUUGUCGUUACcacaacgGCCGCCGACGUc -3'
miRNA:   3'- uGgCAGCGGCAGUGa------CGGUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 116672 0.7 0.654059
Target:  5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3'
miRNA:   3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 121229 0.72 0.547022
Target:  5'- -aCGUCGUCGUgGacGCCACCGACAg -3'
miRNA:   3'- ugGCAGCGGCAgUgaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 127799 0.66 0.858951
Target:  5'- cACCGUCGCCGUaCACcccaGCguuuuacgCGCCGugGc -3'
miRNA:   3'- -UGGCAGCGGCA-GUGa---CG--------GUGGCugUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.