Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 129648 | 0.67 | 0.835267 |
Target: 5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3' miRNA: 3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 130150 | 0.68 | 0.758968 |
Target: 5'- cGCCGUCGCgCGUUGCaaGUCACCGGu-- -3' miRNA: 3'- -UGGCAGCG-GCAGUGa-CGGUGGCUgua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 131728 | 0.69 | 0.692972 |
Target: 5'- gACCG--GCCGUCGCcGCCGCCG-CGg -3' miRNA: 3'- -UGGCagCGGCAGUGaCGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 135602 | 0.68 | 0.758968 |
Target: 5'- uACCGUCGUCGUCGgCcGaCCGCCG-CGa -3' miRNA: 3'- -UGGCAGCGGCAGU-GaC-GGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 142880 | 0.7 | 0.644271 |
Target: 5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3' miRNA: 3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 148610 | 0.67 | 0.828078 |
Target: 5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 159441 | 0.67 | 0.819935 |
Target: 5'- uCCGUCGUCGUCuGCggccgcgGCCGCuCGAUg- -3' miRNA: 3'- uGGCAGCGGCAG-UGa------CGGUG-GCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 168353 | 0.69 | 0.712181 |
Target: 5'- cGCCGcCGCCG-CGgUGCCGCCG-Cu- -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCuGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 170097 | 0.68 | 0.758968 |
Target: 5'- cGCCGUcucccgacggcaCGCCGUCuguGCUGUCGuuGACGc -3' miRNA: 3'- -UGGCA------------GCGGCAG---UGACGGUggCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 170370 | 0.69 | 0.73114 |
Target: 5'- aGCCGgCGCgGgaGCUGCCGuCCGACAg -3' miRNA: 3'- -UGGCaGCGgCagUGACGGU-GGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 172053 | 0.7 | 0.644271 |
Target: 5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3' miRNA: 3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 175328 | 1.05 | 0.003944 |
Target: 5'- cACCGUCGCCGUCACUGCCACCGACAUg -3' miRNA: 3'- -UGGCAGCGGCAGUGACGGUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 178777 | 0.72 | 0.541299 |
Target: 5'- uGCCGUUGcCCGUgucggaagaagauccCGCUGCCGCCGcCAc -3' miRNA: 3'- -UGGCAGC-GGCA---------------GUGACGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 178889 | 0.83 | 0.130835 |
Target: 5'- cUCGUCGCCGcCGCUGCCGCCGGuCGUg -3' miRNA: 3'- uGGCAGCGGCaGUGACGGUGGCU-GUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 184508 | 0.71 | 0.585606 |
Target: 5'- cGCCG-CGCCGUgugagaguucCAggGCCGCCGACAc -3' miRNA: 3'- -UGGCaGCGGCA----------GUgaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 188861 | 0.71 | 0.614886 |
Target: 5'- uGCUGgCGCCGgCGCUGCCauccucacGCCGACGc -3' miRNA: 3'- -UGGCaGCGGCaGUGACGG--------UGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 191965 | 0.78 | 0.261824 |
Target: 5'- cGCuCGUCGCUGUCGCcGCCACCG-CAg -3' miRNA: 3'- -UG-GCAGCGGCAGUGaCGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 192124 | 0.68 | 0.784992 |
Target: 5'- cGCCGccacCGCCGUCGUUGCCGguccccguuuccuCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGGCAGUGACGGU-------------GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 195385 | 0.7 | 0.673577 |
Target: 5'- cGCCGUCGCuccgCGUCGCUucGCCGCCa---- -3' miRNA: 3'- -UGGCAGCG----GCAGUGA--CGGUGGcugua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 196953 | 0.77 | 0.306352 |
Target: 5'- cGCCGggGCUGUCGCgcGCCGCCGACGc -3' miRNA: 3'- -UGGCagCGGCAGUGa-CGGUGGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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