Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1595 | 5' | -59.1 | NC_001347.2 | + | 198450 | 0.66 | 0.843867 |
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Target: 5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 199595 | 0.7 | 0.654059 |
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Target: 5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3' miRNA: 3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 200975 | 0.71 | 0.566229 |
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Target: 5'- uACCGggGCCGUCuAC-GCCugCGACGUg -3' miRNA: 3'- -UGGCagCGGCAG-UGaCGGugGCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 208076 | 0.66 | 0.8515 |
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Target: 5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3' miRNA: 3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 208435 | 0.68 | 0.758968 |
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Target: 5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3' miRNA: 3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 210157 | 0.71 | 0.605105 |
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Target: 5'- uGCCGUCGCCG-CACUGCguucuCACUcGCGUc -3' miRNA: 3'- -UGGCAGCGGCaGUGACG-----GUGGcUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 222751 | 0.66 | 0.858951 |
|
Target: 5'- cGCUGcCGCgGcCAUUGCCGCCGcCGc -3' miRNA: 3'- -UGGCaGCGgCaGUGACGGUGGCuGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 229942 | 0.68 | 0.785872 |
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Target: 5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3' miRNA: 3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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