miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 229942 0.68 0.785872
Target:  5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3'
miRNA:   3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5'
1595 5' -59.1 NC_001347.2 + 222751 0.66 0.858951
Target:  5'- cGCUGcCGCgGcCAUUGCCGCCGcCGc -3'
miRNA:   3'- -UGGCaGCGgCaGUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 210157 0.71 0.605105
Target:  5'- uGCCGUCGCCG-CACUGCguucuCACUcGCGUc -3'
miRNA:   3'- -UGGCAGCGGCaGUGACG-----GUGGcUGUA- -5'
1595 5' -59.1 NC_001347.2 + 208435 0.68 0.758968
Target:  5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3'
miRNA:   3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5'
1595 5' -59.1 NC_001347.2 + 208076 0.66 0.8515
Target:  5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3'
miRNA:   3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 200975 0.71 0.566229
Target:  5'- uACCGggGCCGUCuAC-GCCugCGACGUg -3'
miRNA:   3'- -UGGCagCGGCAG-UGaCGGugGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 199595 0.7 0.654059
Target:  5'- cGCCGcgcugcuguuaUCGUCGcCACcGCCGCCGGCGc -3'
miRNA:   3'- -UGGC-----------AGCGGCaGUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 198450 0.66 0.843867
Target:  5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3'
miRNA:   3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 196953 0.77 0.306352
Target:  5'- cGCCGggGCUGUCGCgcGCCGCCGACGc -3'
miRNA:   3'- -UGGCagCGGCAGUGa-CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 195385 0.7 0.673577
Target:  5'- cGCCGUCGCuccgCGUCGCUucGCCGCCa---- -3'
miRNA:   3'- -UGGCAGCG----GCAGUGA--CGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 192124 0.68 0.784992
Target:  5'- cGCCGccacCGCCGUCGUUGCCGguccccguuuccuCCGGCGUc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGACGGU-------------GGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 191965 0.78 0.261824
Target:  5'- cGCuCGUCGCUGUCGCcGCCACCG-CAg -3'
miRNA:   3'- -UG-GCAGCGGCAGUGaCGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 188861 0.71 0.614886
Target:  5'- uGCUGgCGCCGgCGCUGCCauccucacGCCGACGc -3'
miRNA:   3'- -UGGCaGCGGCaGUGACGG--------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 184508 0.71 0.585606
Target:  5'- cGCCG-CGCCGUgugagaguucCAggGCCGCCGACAc -3'
miRNA:   3'- -UGGCaGCGGCA----------GUgaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 178889 0.83 0.130835
Target:  5'- cUCGUCGCCGcCGCUGCCGCCGGuCGUg -3'
miRNA:   3'- uGGCAGCGGCaGUGACGGUGGCU-GUA- -5'
1595 5' -59.1 NC_001347.2 + 178777 0.72 0.541299
Target:  5'- uGCCGUUGcCCGUgucggaagaagauccCGCUGCCGCCGcCAc -3'
miRNA:   3'- -UGGCAGC-GGCA---------------GUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 175328 1.05 0.003944
Target:  5'- cACCGUCGCCGUCACUGCCACCGACAUg -3'
miRNA:   3'- -UGGCAGCGGCAGUGACGGUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 172053 0.7 0.644271
Target:  5'- aGCgCG-CGCUGggaagCGCUGCgCGCCGACAUg -3'
miRNA:   3'- -UG-GCaGCGGCa----GUGACG-GUGGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 170370 0.69 0.73114
Target:  5'- aGCCGgCGCgGgaGCUGCCGuCCGACAg -3'
miRNA:   3'- -UGGCaGCGgCagUGACGGU-GGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 170097 0.68 0.758968
Target:  5'- cGCCGUcucccgacggcaCGCCGUCuguGCUGUCGuuGACGc -3'
miRNA:   3'- -UGGCA------------GCGGCAG---UGACGGUggCUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.