Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 168353 | 0.69 | 0.712181 |
Target: 5'- cGCCGcCGCCG-CGgUGCCGCCG-Cu- -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCuGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 159441 | 0.67 | 0.819935 |
Target: 5'- uCCGUCGUCGUCuGCggccgcgGCCGCuCGAUg- -3' miRNA: 3'- uGGCAGCGGCAG-UGa------CGGUG-GCUGua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 148610 | 0.67 | 0.828078 |
Target: 5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 142880 | 0.7 | 0.644271 |
Target: 5'- gACCGcCGCCG-CGCUGgCAaacuCCGACAUu -3' miRNA: 3'- -UGGCaGCGGCaGUGACgGU----GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 135602 | 0.68 | 0.758968 |
Target: 5'- uACCGUCGUCGUCGgCcGaCCGCCG-CGa -3' miRNA: 3'- -UGGCAGCGGCAGU-GaC-GGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 131728 | 0.69 | 0.692972 |
Target: 5'- gACCG--GCCGUCGCcGCCGCCG-CGg -3' miRNA: 3'- -UGGCagCGGCAGUGaCGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 130150 | 0.68 | 0.758968 |
Target: 5'- cGCCGUCGCgCGUUGCaaGUCACCGGu-- -3' miRNA: 3'- -UGGCAGCG-GCAGUGa-CGGUGGCUgua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 129648 | 0.67 | 0.835267 |
Target: 5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3' miRNA: 3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 127799 | 0.66 | 0.858951 |
Target: 5'- cACCGUCGCCGUaCACcccaGCguuuuacgCGCCGugGc -3' miRNA: 3'- -UGGCAGCGGCA-GUGa---CG--------GUGGCugUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 121229 | 0.72 | 0.547022 |
Target: 5'- -aCGUCGUCGUgGacGCCACCGACAg -3' miRNA: 3'- ugGCAGCGGCAgUgaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 116672 | 0.7 | 0.654059 |
Target: 5'- cGCCGcCGCCGUCGCcaCCuCCGGCGc -3' miRNA: 3'- -UGGCaGCGGCAGUGacGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 115177 | 0.68 | 0.749784 |
Target: 5'- gUgGUUGUCGUUACcacaacgGCCGCCGACGUc -3' miRNA: 3'- uGgCAGCGGCAGUGa------CGGUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 114792 | 0.66 | 0.843867 |
Target: 5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3' miRNA: 3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 113456 | 0.67 | 0.819935 |
Target: 5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3' miRNA: 3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 109808 | 0.7 | 0.66383 |
Target: 5'- cGCUG-CGCaacccaaaCGUCGCcGCCACCGGCAa -3' miRNA: 3'- -UGGCaGCG--------GCAGUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 103241 | 0.65 | 0.879479 |
Target: 5'- uGCCGacgagcCGCUGUUugUggacgauuaccguGCCACCGACGa -3' miRNA: 3'- -UGGCa-----GCGGCAGugA-------------CGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 101689 | 0.67 | 0.819935 |
Target: 5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3' miRNA: 3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 96396 | 0.66 | 0.8515 |
Target: 5'- gGCCGUgCGCa-UCGcCUGCCucauCCGACAg -3' miRNA: 3'- -UGGCA-GCGgcAGU-GACGGu---GGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 92387 | 0.72 | 0.546067 |
Target: 5'- cGCCGgCGCCGccuagcgUCACUGCCuuCUGACAg -3' miRNA: 3'- -UGGCaGCGGC-------AGUGACGGu-GGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 89731 | 0.66 | 0.8515 |
Target: 5'- cACCaccCGCCGUCGucGCCugCGGCGUc -3' miRNA: 3'- -UGGca-GCGGCAGUgaCGGugGCUGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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