miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 88350 0.79 0.227975
Target:  5'- aACCGUCGCCGcuggcggCGCUGCCGCgagaCGACGUg -3'
miRNA:   3'- -UGGCAGCGGCa------GUGACGGUG----GCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 88221 0.68 0.785872
Target:  5'- cGCCGcucaCGCUguccgagggGUCGCUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCa---GCGG---------CAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 86000 0.69 0.703564
Target:  5'- aACCGUcCGCCGcCGCggcgcccggcagacaGCCGCUGACGa -3'
miRNA:   3'- -UGGCA-GCGGCaGUGa--------------CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 85853 0.69 0.692972
Target:  5'- gACCGagGCCGUCGCg--CACCGGCu- -3'
miRNA:   3'- -UGGCagCGGCAGUGacgGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 85341 0.66 0.858951
Target:  5'- cGCCGccagCGCCGUCGCccgcgGCUagGCCGAgAc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGa----CGG--UGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 81987 0.71 0.585606
Target:  5'- cACUGcUCGUCgGUCACUGCCacggccacgaaACCGACAg -3'
miRNA:   3'- -UGGC-AGCGG-CAGUGACGG-----------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 81545 0.71 0.572994
Target:  5'- cACCGUCGCCGUCgucacguggcagcgGCggcaacaGCCAgCGACGa -3'
miRNA:   3'- -UGGCAGCGGCAG--------------UGa------CGGUgGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 75773 0.69 0.683294
Target:  5'- cGCCGUC-UCGUCGUUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCAGcGGCAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 68175 0.72 0.546067
Target:  5'- gGCCGUCGCgaGUCccgccGCUGCCACCcagcgagGACAc -3'
miRNA:   3'- -UGGCAGCGg-CAG-----UGACGGUGG-------CUGUa -5'
1595 5' -59.1 NC_001347.2 + 68050 0.66 0.866214
Target:  5'- cCCGcCGCCGcCACcGCCACCa---- -3'
miRNA:   3'- uGGCaGCGGCaGUGaCGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 67357 0.76 0.341569
Target:  5'- aGCCGcCGCCGUCGCcGCCGCCucgGACu- -3'
miRNA:   3'- -UGGCaGCGGCAGUGaCGGUGG---CUGua -5'
1595 5' -59.1 NC_001347.2 + 64855 0.68 0.758968
Target:  5'- cGCCGUCaG-CGUCGCUcuaccGCCGCCGAgAa -3'
miRNA:   3'- -UGGCAG-CgGCAGUGA-----CGGUGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 63143 0.69 0.702604
Target:  5'- cCCGUCGCCGcaaaccccgUCAUgcccGCCACCGcCAc -3'
miRNA:   3'- uGGCAGCGGC---------AGUGa---CGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 63106 0.71 0.585606
Target:  5'- cGCCGUgGCCGcCGCgGCCGCCG-Cu- -3'
miRNA:   3'- -UGGCAgCGGCaGUGaCGGUGGCuGua -5'
1595 5' -59.1 NC_001347.2 + 62770 0.7 0.644271
Target:  5'- gGCCGacccCGCCGUUGCgGCCGCCGcucACAg -3'
miRNA:   3'- -UGGCa---GCGGCAGUGaCGGUGGC---UGUa -5'
1595 5' -59.1 NC_001347.2 + 56439 0.68 0.758968
Target:  5'- cUCGUUGCUGcCGCgcgcGCCACCaGACAUa -3'
miRNA:   3'- uGGCAGCGGCaGUGa---CGGUGG-CUGUA- -5'
1595 5' -59.1 NC_001347.2 + 38448 0.7 0.634476
Target:  5'- cGCCGUCcCCGUCGCcgGCCccGCCGcGCAg -3'
miRNA:   3'- -UGGCAGcGGCAGUGa-CGG--UGGC-UGUa -5'
1595 5' -59.1 NC_001347.2 + 38404 0.68 0.749784
Target:  5'- uCCGUCuCCGUgcCGCUcGCCGCUGGCGg -3'
miRNA:   3'- uGGCAGcGGCA--GUGA-CGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 38235 0.7 0.654059
Target:  5'- cACCGUCGgCGcCGCUGCUGCUGccGCGUc -3'
miRNA:   3'- -UGGCAGCgGCaGUGACGGUGGC--UGUA- -5'
1595 5' -59.1 NC_001347.2 + 28003 0.68 0.76805
Target:  5'- gUCGcCGCCGUCACcaCCGCCGAUc- -3'
miRNA:   3'- uGGCaGCGGCAGUGacGGUGGCUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.