Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1595 | 5' | -59.1 | NC_001347.2 | + | 26048 | 0.67 | 0.836057 |
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Target: 5'- -aCGcCGCCGggCGCUGCgGucCCGACAUg -3' miRNA: 3'- ugGCaGCGGCa-GUGACGgU--GGCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 25347 | 0.67 | 0.836057 |
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Target: 5'- gACUGUUGCCGcguggCGCUGCaCACCuauGGCGc -3' miRNA: 3'- -UGGCAGCGGCa----GUGACG-GUGG---CUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 17708 | 0.66 | 0.843867 |
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Target: 5'- uCCGacUCGCUGUCgagacgGCU-CCGCCGGCAUg -3' miRNA: 3'- uGGC--AGCGGCAG------UGAcGGUGGCUGUA- -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 17331 | 0.71 | 0.605105 |
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Target: 5'- cGCgGUUGCCG-CGCguaugGCCGCCGGCc- -3' miRNA: 3'- -UGgCAGCGGCaGUGa----CGGUGGCUGua -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 17131 | 0.74 | 0.428877 |
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Target: 5'- cGCCGUCgGCCGcCGCccaUGCCACgCGACGa -3' miRNA: 3'- -UGGCAG-CGGCaGUG---ACGGUG-GCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 5508 | 0.67 | 0.836057 |
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Target: 5'- cGCCGUUcCCGUCgACUGCaaaACCGcCAg -3' miRNA: 3'- -UGGCAGcGGCAG-UGACGg--UGGCuGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 4872 | 0.66 | 0.858214 |
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Target: 5'- cGCCGUCGCaucgcccCGaggCGCUGCUcugaagccaaguGCCGACGg -3' miRNA: 3'- -UGGCAGCG-------GCa--GUGACGG------------UGGCUGUa -5' |
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| 1595 | 5' | -59.1 | NC_001347.2 | + | 463 | 0.68 | 0.785872 |
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Target: 5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3' miRNA: 3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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