Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1595 | 5' | -59.1 | NC_001347.2 | + | 88350 | 0.79 | 0.227975 |
Target: 5'- aACCGUCGCCGcuggcggCGCUGCCGCgagaCGACGUg -3' miRNA: 3'- -UGGCAGCGGCa------GUGACGGUG----GCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 5508 | 0.67 | 0.836057 |
Target: 5'- cGCCGUUcCCGUCgACUGCaaaACCGcCAg -3' miRNA: 3'- -UGGCAGcGGCAG-UGACGg--UGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 17708 | 0.66 | 0.843867 |
Target: 5'- uCCGacUCGCUGUCgagacgGCU-CCGCCGGCAUg -3' miRNA: 3'- uGGC--AGCGGCAG------UGAcGGUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 25347 | 0.67 | 0.836057 |
Target: 5'- gACUGUUGCCGcguggCGCUGCaCACCuauGGCGc -3' miRNA: 3'- -UGGCAGCGGCa----GUGACG-GUGG---CUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 129648 | 0.67 | 0.835267 |
Target: 5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3' miRNA: 3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 148610 | 0.67 | 0.828078 |
Target: 5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3' miRNA: 3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 229942 | 0.68 | 0.785872 |
Target: 5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3' miRNA: 3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 101689 | 0.67 | 0.819935 |
Target: 5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3' miRNA: 3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 113456 | 0.67 | 0.819935 |
Target: 5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3' miRNA: 3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 26048 | 0.67 | 0.836057 |
Target: 5'- -aCGcCGCCGggCGCUGCgGucCCGACAUg -3' miRNA: 3'- ugGCaGCGGCa-GUGACGgU--GGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 114792 | 0.66 | 0.843867 |
Target: 5'- -aCGuUCGCCGgcaCGCUGUC-CCGGCAc -3' miRNA: 3'- ugGC-AGCGGCa--GUGACGGuGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 198450 | 0.66 | 0.843867 |
Target: 5'- uACUGcUGCCGcCGgUGUCACCGAUAa -3' miRNA: 3'- -UGGCaGCGGCaGUgACGGUGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 68050 | 0.66 | 0.866214 |
Target: 5'- cCCGcCGCCGcCACcGCCACCa---- -3' miRNA: 3'- uGGCaGCGGCaGUGaCGGUGGcugua -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 127799 | 0.66 | 0.858951 |
Target: 5'- cACCGUCGCCGUaCACcccaGCguuuuacgCGCCGugGc -3' miRNA: 3'- -UGGCAGCGGCA-GUGa---CG--------GUGGCugUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 222751 | 0.66 | 0.858951 |
Target: 5'- cGCUGcCGCgGcCAUUGCCGCCGcCGc -3' miRNA: 3'- -UGGCaGCGgCaGUGACGGUGGCuGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 85341 | 0.66 | 0.858951 |
Target: 5'- cGCCGccagCGCCGUCGCccgcgGCUagGCCGAgAc -3' miRNA: 3'- -UGGCa---GCGGCAGUGa----CGG--UGGCUgUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 4872 | 0.66 | 0.858214 |
Target: 5'- cGCCGUCGCaucgcccCGaggCGCUGCUcugaagccaaguGCCGACGg -3' miRNA: 3'- -UGGCAGCG-------GCa--GUGACGG------------UGGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 96396 | 0.66 | 0.8515 |
Target: 5'- gGCCGUgCGCa-UCGcCUGCCucauCCGACAg -3' miRNA: 3'- -UGGCA-GCGgcAGU-GACGGu---GGCUGUa -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 89731 | 0.66 | 0.8515 |
Target: 5'- cACCaccCGCCGUCGucGCCugCGGCGUc -3' miRNA: 3'- -UGGca-GCGGCAGUgaCGGugGCUGUA- -5' |
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1595 | 5' | -59.1 | NC_001347.2 | + | 208076 | 0.66 | 0.8515 |
Target: 5'- uGCCG-CGUCGgguacCGCUGCCgcagaugggcgcACCGACGg -3' miRNA: 3'- -UGGCaGCGGCa----GUGACGG------------UGGCUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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