miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1595 5' -59.1 NC_001347.2 + 4872 0.66 0.858214
Target:  5'- cGCCGUCGCaucgcccCGaggCGCUGCUcugaagccaaguGCCGACGg -3'
miRNA:   3'- -UGGCAGCG-------GCa--GUGACGG------------UGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 85341 0.66 0.858951
Target:  5'- cGCCGccagCGCCGUCGCccgcgGCUagGCCGAgAc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGa----CGG--UGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 222751 0.66 0.858951
Target:  5'- cGCUGcCGCgGcCAUUGCCGCCGcCGc -3'
miRNA:   3'- -UGGCaGCGgCaGUGACGGUGGCuGUa -5'
1595 5' -59.1 NC_001347.2 + 127799 0.66 0.858951
Target:  5'- cACCGUCGCCGUaCACcccaGCguuuuacgCGCCGugGc -3'
miRNA:   3'- -UGGCAGCGGCA-GUGa---CG--------GUGGCugUa -5'
1595 5' -59.1 NC_001347.2 + 68050 0.66 0.866214
Target:  5'- cCCGcCGCCGcCACcGCCACCa---- -3'
miRNA:   3'- uGGCaGCGGCaGUGaCGGUGGcugua -5'
1595 5' -59.1 NC_001347.2 + 25347 0.67 0.836057
Target:  5'- gACUGUUGCCGcguggCGCUGCaCACCuauGGCGc -3'
miRNA:   3'- -UGGCAGCGGCa----GUGACG-GUGG---CUGUa -5'
1595 5' -59.1 NC_001347.2 + 129648 0.67 0.835267
Target:  5'- aGCCG-CGCgGUCgcauccuGCUGUCACaCGACGa -3'
miRNA:   3'- -UGGCaGCGgCAG-------UGACGGUG-GCUGUa -5'
1595 5' -59.1 NC_001347.2 + 56439 0.68 0.758968
Target:  5'- cUCGUUGCUGcCGCgcgcGCCACCaGACAUa -3'
miRNA:   3'- uGGCAGCGGCaGUGa---CGGUGG-CUGUA- -5'
1595 5' -59.1 NC_001347.2 + 208435 0.68 0.758968
Target:  5'- cGCCGccuagCGCCGUCAacucgaUGCCGgCGGCu- -3'
miRNA:   3'- -UGGCa----GCGGCAGUg-----ACGGUgGCUGua -5'
1595 5' -59.1 NC_001347.2 + 130150 0.68 0.758968
Target:  5'- cGCCGUCGCgCGUUGCaaGUCACCGGu-- -3'
miRNA:   3'- -UGGCAGCG-GCAGUGa-CGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 64855 0.68 0.758968
Target:  5'- cGCCGUCaG-CGUCGCUcuaccGCCGCCGAgAa -3'
miRNA:   3'- -UGGCAG-CgGCAGUGA-----CGGUGGCUgUa -5'
1595 5' -59.1 NC_001347.2 + 28003 0.68 0.76805
Target:  5'- gUCGcCGCCGUCACcaCCGCCGAUc- -3'
miRNA:   3'- uGGCaGCGGCAGUGacGGUGGCUGua -5'
1595 5' -59.1 NC_001347.2 + 192124 0.68 0.784992
Target:  5'- cGCCGccacCGCCGUCGUUGCCGguccccguuuccuCCGGCGUc -3'
miRNA:   3'- -UGGCa---GCGGCAGUGACGGU-------------GGCUGUA- -5'
1595 5' -59.1 NC_001347.2 + 88221 0.68 0.785872
Target:  5'- cGCCGcucaCGCUguccgagggGUCGCUGCCGCCGGu-- -3'
miRNA:   3'- -UGGCa---GCGG---------CAGUGACGGUGGCUgua -5'
1595 5' -59.1 NC_001347.2 + 463 0.68 0.785872
Target:  5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3'
miRNA:   3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5'
1595 5' -59.1 NC_001347.2 + 159441 0.67 0.819935
Target:  5'- uCCGUCGUCGUCuGCggccgcgGCCGCuCGAUg- -3'
miRNA:   3'- uGGCAGCGGCAG-UGa------CGGUG-GCUGua -5'
1595 5' -59.1 NC_001347.2 + 113456 0.67 0.819935
Target:  5'- uGCaCGUaGcCCGUCACggucgGCCGCCGugAg -3'
miRNA:   3'- -UG-GCAgC-GGCAGUGa----CGGUGGCugUa -5'
1595 5' -59.1 NC_001347.2 + 101689 0.67 0.819935
Target:  5'- cACgCGUCugGCCGaaGCgGCCACCGAUAg -3'
miRNA:   3'- -UG-GCAG--CGGCagUGaCGGUGGCUGUa -5'
1595 5' -59.1 NC_001347.2 + 229942 0.68 0.785872
Target:  5'- cGCCGUCGCCGUC-CUcCgCACC-ACAc -3'
miRNA:   3'- -UGGCAGCGGCAGuGAcG-GUGGcUGUa -5'
1595 5' -59.1 NC_001347.2 + 148610 0.67 0.828078
Target:  5'- gACCGgcggUGCgGUCGCggGUgGCCGGCGUc -3'
miRNA:   3'- -UGGCa---GCGgCAGUGa-CGgUGGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.