miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 58603 0.66 0.895677
Target:  5'- cGGCggagucgagaucgaCGCGCGCGGCGgagucgcCGGucUCGCGGa -3'
miRNA:   3'- -CCGa-------------GCGUGCGCCGCa------GCUu-GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 192500 0.66 0.895677
Target:  5'- gGGCUguUGCACGCugagguccaccgcuuGGCGgaGAGCCGCc- -3'
miRNA:   3'- -CCGA--GCGUGCG---------------CCGCagCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 31168 0.66 0.893198
Target:  5'- aGGaCUgGUACGUGGUGUgCGGAUCGgGc -3'
miRNA:   3'- -CC-GAgCGUGCGCCGCA-GCUUGGCgCu -5'
15954 3' -59.4 NC_004065.1 + 106262 0.66 0.893198
Target:  5'- aGGCgaccgGCGCGCGGCGcacCGAGgUGCu- -3'
miRNA:   3'- -CCGag---CGUGCGCCGCa--GCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 142616 0.66 0.893198
Target:  5'- cGCUUcgGCAUGCaGUG-CGAAuCCGCGAu -3'
miRNA:   3'- cCGAG--CGUGCGcCGCaGCUU-GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 41117 0.66 0.886861
Target:  5'- cGGCaggUGUcCG-GGuCGUCGGGCCGUGAg -3'
miRNA:   3'- -CCGa--GCGuGCgCC-GCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 130067 0.66 0.886861
Target:  5'- aGCaCGC-CGCGGCGguggUCGAcuACgGCGAu -3'
miRNA:   3'- cCGaGCGuGCGCCGC----AGCU--UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 109241 0.66 0.886861
Target:  5'- cGGCg-GCGguaGCGGCGUCGGugacgaugacgACuCGCGGc -3'
miRNA:   3'- -CCGagCGUg--CGCCGCAGCU-----------UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 489 0.66 0.886861
Target:  5'- gGGC-CGCGCGCcGCGU----CCGCGGg -3'
miRNA:   3'- -CCGaGCGUGCGcCGCAgcuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 85178 0.66 0.886861
Target:  5'- cGGCaCGCAgGUGaaccaGUCGAcCCGCGAc -3'
miRNA:   3'- -CCGaGCGUgCGCcg---CAGCUuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 188971 0.66 0.886861
Target:  5'- cGGCuucgUCGcCGCGCGGCc-CGAGCUcuGCGGc -3'
miRNA:   3'- -CCG----AGC-GUGCGCCGcaGCUUGG--CGCU- -5'
15954 3' -59.4 NC_004065.1 + 116898 0.66 0.886861
Target:  5'- cGCUgGgGCGCGGgaUCGAGCUGCuGAu -3'
miRNA:   3'- cCGAgCgUGCGCCgcAGCUUGGCG-CU- -5'
15954 3' -59.4 NC_004065.1 + 70934 0.66 0.886861
Target:  5'- cGGCUauuuguaauacaCGCcggguCGCGGCgGUCGGuccagAUCGCGAu -3'
miRNA:   3'- -CCGA------------GCGu----GCGCCG-CAGCU-----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 171410 0.66 0.880327
Target:  5'- cGGCgacucCGC-CGCGcGCGUCGAucucgacuCCGCc- -3'
miRNA:   3'- -CCGa----GCGuGCGC-CGCAGCUu-------GGCGcu -5'
15954 3' -59.4 NC_004065.1 + 66588 0.66 0.880327
Target:  5'- uGGCcgacUGCACgGCGGCGgcc-ACCGCGGc -3'
miRNA:   3'- -CCGa---GCGUG-CGCCGCagcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 41484 0.66 0.880327
Target:  5'- aGCgugCGC-CGgGGCGUCGGgacggggaGCgCGCGGg -3'
miRNA:   3'- cCGa--GCGuGCgCCGCAGCU--------UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 157745 0.66 0.880327
Target:  5'- uGCUCGCGuCGCGGUuccUCGggU-GCGAc -3'
miRNA:   3'- cCGAGCGU-GCGCCGc--AGCuuGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 196365 0.66 0.880327
Target:  5'- cGGCccucccCGCGCGcCGGacgGUCGAAgCGCGc -3'
miRNA:   3'- -CCGa-----GCGUGC-GCCg--CAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 128 0.66 0.879662
Target:  5'- uGGCUgcgCGCACGUcaccgagGGCGUgGcACCGUGc -3'
miRNA:   3'- -CCGA---GCGUGCG-------CCGCAgCuUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 206530 0.66 0.876312
Target:  5'- cGGCgauaGCGCGgacgcgaaucggacuCGGCGUCgucaucgucgcGAGCCGCGc -3'
miRNA:   3'- -CCGag--CGUGC---------------GCCGCAG-----------CUUGGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.