Results 1 - 20 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15954 | 3' | -59.4 | NC_004065.1 | + | 58603 | 0.66 | 0.895677 |
Target: 5'- cGGCggagucgagaucgaCGCGCGCGGCGgagucgcCGGucUCGCGGa -3' miRNA: 3'- -CCGa-------------GCGUGCGCCGCa------GCUu-GGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 27069 | 0.66 | 0.873597 |
Target: 5'- aGGCUUggaGCACGUGuacucGUGUCGAgucaaggguAUCGCGAc -3' miRNA: 3'- -CCGAG---CGUGCGC-----CGCAGCU---------UGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 138323 | 0.66 | 0.873597 |
Target: 5'- aGCUCGCGgacauCGUGGCcgcgauGUCGcuCUGCGAc -3' miRNA: 3'- cCGAGCGU-----GCGCCG------CAGCuuGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 142616 | 0.66 | 0.893198 |
Target: 5'- cGCUUcgGCAUGCaGUG-CGAAuCCGCGAu -3' miRNA: 3'- cCGAG--CGUGCGcCGCaGCUU-GGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 128 | 0.66 | 0.879662 |
Target: 5'- uGGCUgcgCGCACGUcaccgagGGCGUgGcACCGUGc -3' miRNA: 3'- -CCGA---GCGUGCG-------CCGCAgCuUGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 206530 | 0.66 | 0.876312 |
Target: 5'- cGGCgauaGCGCGgacgcgaaucggacuCGGCGUCgucaucgucgcGAGCCGCGc -3' miRNA: 3'- -CCGag--CGUGC---------------GCCGCAG-----------CUUGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 108764 | 0.66 | 0.869468 |
Target: 5'- aGCaagaGCACgcuggaccagaggugGCGGCGUCGAACCugGCGu -3' miRNA: 3'- cCGag--CGUG---------------CGCCGCAGCUUGG--CGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 58426 | 0.66 | 0.865976 |
Target: 5'- aGGCgaugcggUUGCugGCGGUGaacUCGAGCuCGCu- -3' miRNA: 3'- -CCG-------AGCGugCGCCGC---AGCUUG-GCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 104400 | 0.66 | 0.866678 |
Target: 5'- cGGCUCGUGCacuucuaccagGCGcGCaUCGAcccGCCGCGc -3' miRNA: 3'- -CCGAGCGUG-----------CGC-CGcAGCU---UGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 41484 | 0.66 | 0.880327 |
Target: 5'- aGCgugCGC-CGgGGCGUCGGgacggggaGCgCGCGGg -3' miRNA: 3'- cCGa--GCGuGCgCCGCAGCU--------UG-GCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 192500 | 0.66 | 0.895677 |
Target: 5'- gGGCUguUGCACGCugagguccaccgcuuGGCGgaGAGCCGCc- -3' miRNA: 3'- -CCGA--GCGUGCG---------------CCGCagCUUGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 109912 | 0.66 | 0.866678 |
Target: 5'- cGGCUCGUccgcCGCGGCcgccGUCGcgucCCGgGAg -3' miRNA: 3'- -CCGAGCGu---GCGCCG----CAGCuu--GGCgCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 127212 | 0.66 | 0.873597 |
Target: 5'- uGGUUCGgGaGCGGCG----GCCGCGAg -3' miRNA: 3'- -CCGAGCgUgCGCCGCagcuUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 66115 | 0.66 | 0.870852 |
Target: 5'- gGGCgacaucaccgaggCGCugGC-GCGcUGGGCCGCGGa -3' miRNA: 3'- -CCGa------------GCGugCGcCGCaGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 196365 | 0.66 | 0.880327 |
Target: 5'- cGGCccucccCGCGCGcCGGacgGUCGAAgCGCGc -3' miRNA: 3'- -CCGa-----GCGUGC-GCCg--CAGCUUgGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 109241 | 0.66 | 0.886861 |
Target: 5'- cGGCg-GCGguaGCGGCGUCGGugacgaugacgACuCGCGGc -3' miRNA: 3'- -CCGagCGUg--CGCCGCAGCU-----------UG-GCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 18148 | 0.66 | 0.873597 |
Target: 5'- cGGgaUGUugGCGGUaUCGu-CCGCGGg -3' miRNA: 3'- -CCgaGCGugCGCCGcAGCuuGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 41117 | 0.66 | 0.886861 |
Target: 5'- cGGCaggUGUcCG-GGuCGUCGGGCCGUGAg -3' miRNA: 3'- -CCGa--GCGuGCgCC-GCAGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 114971 | 0.66 | 0.871541 |
Target: 5'- -cCUCGCGCGCGcCGUUGcccucggcccuggcGGCCGCGc -3' miRNA: 3'- ccGAGCGUGCGCcGCAGC--------------UUGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 229661 | 0.66 | 0.873597 |
Target: 5'- cGGCagUgGCAgGUgGGCGUCGGGgCGCGc -3' miRNA: 3'- -CCG--AgCGUgCG-CCGCAGCUUgGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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