miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 188971 0.66 0.886861
Target:  5'- cGGCuucgUCGcCGCGCGGCc-CGAGCUcuGCGGc -3'
miRNA:   3'- -CCG----AGC-GUGCGCCGcaGCUUGG--CGCU- -5'
15954 3' -59.4 NC_004065.1 + 114971 0.66 0.871541
Target:  5'- -cCUCGCGCGCGcCGUUGcccucggcccuggcGGCCGCGc -3'
miRNA:   3'- ccGAGCGUGCGCcGCAGC--------------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 85178 0.66 0.886861
Target:  5'- cGGCaCGCAgGUGaaccaGUCGAcCCGCGAc -3'
miRNA:   3'- -CCGaGCGUgCGCcg---CAGCUuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 192500 0.66 0.895677
Target:  5'- gGGCUguUGCACGCugagguccaccgcuuGGCGgaGAGCCGCc- -3'
miRNA:   3'- -CCGA--GCGUGCG---------------CCGCagCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 41117 0.66 0.886861
Target:  5'- cGGCaggUGUcCG-GGuCGUCGGGCCGUGAg -3'
miRNA:   3'- -CCGa--GCGuGCgCC-GCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106262 0.66 0.893198
Target:  5'- aGGCgaccgGCGCGCGGCGcacCGAGgUGCu- -3'
miRNA:   3'- -CCGag---CGUGCGCCGCa--GCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 104400 0.66 0.866678
Target:  5'- cGGCUCGUGCacuucuaccagGCGcGCaUCGAcccGCCGCGc -3'
miRNA:   3'- -CCGAGCGUG-----------CGC-CGcAGCU---UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 58603 0.66 0.895677
Target:  5'- cGGCggagucgagaucgaCGCGCGCGGCGgagucgcCGGucUCGCGGa -3'
miRNA:   3'- -CCGa-------------GCGUGCGCCGCa------GCUu-GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 171410 0.66 0.880327
Target:  5'- cGGCgacucCGC-CGCGcGCGUCGAucucgacuCCGCc- -3'
miRNA:   3'- -CCGa----GCGuGCGC-CGCAGCUu-------GGCGcu -5'
15954 3' -59.4 NC_004065.1 + 109241 0.66 0.886861
Target:  5'- cGGCg-GCGguaGCGGCGUCGGugacgaugacgACuCGCGGc -3'
miRNA:   3'- -CCGagCGUg--CGCCGCAGCU-----------UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 108764 0.66 0.869468
Target:  5'- aGCaagaGCACgcuggaccagaggugGCGGCGUCGAACCugGCGu -3'
miRNA:   3'- cCGag--CGUG---------------CGCCGCAGCUUGG--CGCu -5'
15954 3' -59.4 NC_004065.1 + 31168 0.66 0.893198
Target:  5'- aGGaCUgGUACGUGGUGUgCGGAUCGgGc -3'
miRNA:   3'- -CC-GAgCGUGCGCCGCA-GCUUGGCgCu -5'
15954 3' -59.4 NC_004065.1 + 32322 0.66 0.873597
Target:  5'- cGGC-CGCGa-CGGCGUCGGA-CGuCGAg -3'
miRNA:   3'- -CCGaGCGUgcGCCGCAGCUUgGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 190299 0.66 0.873597
Target:  5'- cGGCgaucCGguCGCGGCGuUCGGagauACgGUGAg -3'
miRNA:   3'- -CCGa---GCguGCGCCGC-AGCU----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 86909 0.66 0.873597
Target:  5'- cGGuCUCGCccucggcgGCGCGcGCGUCGAaaacgaagACgGUGGa -3'
miRNA:   3'- -CC-GAGCG--------UGCGC-CGCAGCU--------UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 39201 0.67 0.837192
Target:  5'- -uCUCGCGCaCGGUGUCGcgUCGCa- -3'
miRNA:   3'- ccGAGCGUGcGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 207509 0.67 0.852286
Target:  5'- cGCggCGCGauaGCGGuCGUCGGuccuccucGCCGCGc -3'
miRNA:   3'- cCGa-GCGUg--CGCC-GCAGCU--------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 164546 0.67 0.859572
Target:  5'- aGCUCGCugugucgagccgGCgGCGGCGcCG-ACCGCu- -3'
miRNA:   3'- cCGAGCG------------UG-CGCCGCaGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 122819 0.67 0.829396
Target:  5'- cGCUCGCAUGCGcgaguagucgcGCGUCuuguccuugacGACCGCGu -3'
miRNA:   3'- cCGAGCGUGCGC-----------CGCAGc----------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 151137 0.67 0.829396
Target:  5'- cGGCggcaaCGC-CGCGaugauCGUCGGcgACCGCGAg -3'
miRNA:   3'- -CCGa----GCGuGCGCc----GCAGCU--UGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.