miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 70042 0.67 0.83642
Target:  5'- cGCUCGuCACGguggagaCGGCcaCGAucGCCGCGAu -3'
miRNA:   3'- cCGAGC-GUGC-------GCCGcaGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 200868 0.67 0.837192
Target:  5'- gGGggCGCGgGCGGUGgCGAAUCGuCGGu -3'
miRNA:   3'- -CCgaGCGUgCGCCGCaGCUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 6471 0.67 0.821442
Target:  5'- gGGuCUCGCuCGCGuuGUCGcgAACCGCa- -3'
miRNA:   3'- -CC-GAGCGuGCGCcgCAGC--UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 101076 0.67 0.837192
Target:  5'- aGCUCGCGCcgGUcucgGGCGUuucucgccuuggCGAacGCCGCGAa -3'
miRNA:   3'- cCGAGCGUG--CG----CCGCA------------GCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187991 0.67 0.837192
Target:  5'- cGGC-CGCGCGCaacauGGCucgCGGAgguCCGCGAc -3'
miRNA:   3'- -CCGaGCGUGCG-----CCGca-GCUU---GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 92522 0.67 0.844069
Target:  5'- cGGUgccUCGCGCGCgcguacgGGCGggCGGGCgCGCGc -3'
miRNA:   3'- -CCG---AGCGUGCG-------CCGCa-GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 135052 0.67 0.844824
Target:  5'- aGGUcaggCGUACGCGGC----AGCCGCGGa -3'
miRNA:   3'- -CCGa---GCGUGCGCCGcagcUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 151525 0.67 0.859572
Target:  5'- aGGC-CGCugccggccGgGCGGUGUCGGGCgCGCu- -3'
miRNA:   3'- -CCGaGCG--------UgCGCCGCAGCUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 112632 0.67 0.859572
Target:  5'- aGCccagCGCGCGCGGCcgagcGUCGAuaugGCCGagGAa -3'
miRNA:   3'- cCGa---GCGUGCGCCG-----CAGCU----UGGCg-CU- -5'
15954 3' -59.4 NC_004065.1 + 79622 0.67 0.821442
Target:  5'- cGCUgCGCGCGCGGaCGcugCGGGCgUGCGu -3'
miRNA:   3'- cCGA-GCGUGCGCC-GCa--GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 155226 0.67 0.859572
Target:  5'- cGCUCGUcagcaucuuGCGCGaGCG-Cu-GCCGCGAg -3'
miRNA:   3'- cCGAGCG---------UGCGC-CGCaGcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 96416 0.67 0.859572
Target:  5'- cGCUCGCGaGCGGCGgc--ACgGCGGa -3'
miRNA:   3'- cCGAGCGUgCGCCGCagcuUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 166498 0.67 0.859572
Target:  5'- ---aCGCuCGCGGCGaUCuacGGCCGCGAg -3'
miRNA:   3'- ccgaGCGuGCGCCGC-AGc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99942 0.67 0.859572
Target:  5'- cGGaC-CGC-CGCGGCGgCGGcugcuGCUGCGAa -3'
miRNA:   3'- -CC-GaGCGuGCGCCGCaGCU-----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78672 0.67 0.852286
Target:  5'- cGGCcggCGC-CGCGGCGccCGAGa-GCGAg -3'
miRNA:   3'- -CCGa--GCGuGCGCCGCa-GCUUggCGCU- -5'
15954 3' -59.4 NC_004065.1 + 152050 0.67 0.844824
Target:  5'- cGGCUCGC-CGCGGCcagCGucUCGgGGc -3'
miRNA:   3'- -CCGAGCGuGCGCCGca-GCuuGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 187029 0.67 0.851548
Target:  5'- uGGCg-GCgGCGCGGCGUCuGAggugaugcguagcACCGCu- -3'
miRNA:   3'- -CCGagCG-UGCGCCGCAG-CU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 171805 0.67 0.852286
Target:  5'- -cUUCGUGCGCGGCGaCGugggcuuuGACCGCa- -3'
miRNA:   3'- ccGAGCGUGCGCCGCaGC--------UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 168165 0.67 0.852286
Target:  5'- aGGCccuucCGCGCGgGGCG-CGAcagcGgCGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCgCCGCaGCU----UgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 196106 0.67 0.852286
Target:  5'- cGGCUCGCcacCGCcaacGGCGgguaCGGcauCCGCGGu -3'
miRNA:   3'- -CCGAGCGu--GCG----CCGCa---GCUu--GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.