miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 77842 0.67 0.837192
Target:  5'- aGGCUcCGgACGCGGCGUgGGcuCCcCGGu -3'
miRNA:   3'- -CCGA-GCgUGCGCCGCAgCUu-GGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 39201 0.67 0.837192
Target:  5'- -uCUCGCGCaCGGUGUCGcgUCGCa- -3'
miRNA:   3'- ccGAGCGUGcGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 167885 0.67 0.829396
Target:  5'- aGCUgauccccuccUGUACGCGGCGaCGAugccgccucCCGCGAg -3'
miRNA:   3'- cCGA----------GCGUGCGCCGCaGCUu--------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 196106 0.67 0.852286
Target:  5'- cGGCUCGCcacCGCcaacGGCGgguaCGGcauCCGCGGu -3'
miRNA:   3'- -CCGAGCGu--GCG----CCGCa---GCUu--GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106447 0.67 0.852286
Target:  5'- cGCUCGUcgucgAUGCugGGCGUCGAcCCGUa- -3'
miRNA:   3'- cCGAGCG-----UGCG--CCGCAGCUuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 168165 0.67 0.852286
Target:  5'- aGGCccuucCGCGCGgGGCG-CGAcagcGgCGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCgCCGCaGCU----UgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187029 0.67 0.851548
Target:  5'- uGGCg-GCgGCGCGGCGUCuGAggugaugcguagcACCGCu- -3'
miRNA:   3'- -CCGagCG-UGCGCCGCAG-CU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 151352 0.67 0.844824
Target:  5'- cGCUCucggGCGcCGCGGCGcCGGccGCUGCGc -3'
miRNA:   3'- cCGAG----CGU-GCGCCGCaGCU--UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 186393 0.67 0.844824
Target:  5'- aGGCUgCGUugGUGGUucguGUCugGAACCGCc- -3'
miRNA:   3'- -CCGA-GCGugCGCCG----CAG--CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 70042 0.67 0.83642
Target:  5'- cGCUCGuCACGguggagaCGGCcaCGAucGCCGCGAu -3'
miRNA:   3'- cCGAGC-GUGC-------GCCGcaGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 151137 0.67 0.829396
Target:  5'- cGGCggcaaCGC-CGCGaugauCGUCGGcgACCGCGAg -3'
miRNA:   3'- -CCGa----GCGuGCGCc----GCAGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 122819 0.67 0.829396
Target:  5'- cGCUCGCAUGCGcgaguagucgcGCGUCuuguccuugacGACCGCGu -3'
miRNA:   3'- cCGAGCGUGCGC-----------CGCAGc----------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 135652 0.67 0.829396
Target:  5'- aGCUCGC-CGCGGCcguaacgcgcGUCGGgggGCuCGCGc -3'
miRNA:   3'- cCGAGCGuGCGCCG----------CAGCU---UG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 123666 0.67 0.829396
Target:  5'- -cCUCGCACGUGGCG-CGcugcCCGUGc -3'
miRNA:   3'- ccGAGCGUGCGCCGCaGCuu--GGCGCu -5'
15954 3' -59.4 NC_004065.1 + 150209 0.67 0.824642
Target:  5'- cGCUCGUAgcggauccgggccaGCGGCGUCGucaggaucAGCCGCu- -3'
miRNA:   3'- cCGAGCGUg-------------CGCCGCAGC--------UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 132510 0.67 0.829396
Target:  5'- cGUUCGCGCGCauCGUCGGggugauccGCCGCa- -3'
miRNA:   3'- cCGAGCGUGCGccGCAGCU--------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 194063 0.67 0.840265
Target:  5'- aGGCaggaGCA-GCGGCG-CGAguccgacgaccugcgGCCGCGAc -3'
miRNA:   3'- -CCGag--CGUgCGCCGCaGCU---------------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 158073 0.67 0.829396
Target:  5'- cGGCUC-CACcgGCGGCGUCGccuCCGaccaGGc -3'
miRNA:   3'- -CCGAGcGUG--CGCCGCAGCuu-GGCg---CU- -5'
15954 3' -59.4 NC_004065.1 + 155226 0.67 0.859572
Target:  5'- cGCUCGUcagcaucuuGCGCGaGCG-Cu-GCCGCGAg -3'
miRNA:   3'- cCGAGCG---------UGCGC-CGCaGcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 186908 0.68 0.813336
Target:  5'- cGGUcuUCGCgaGCGCggaucGGCGcCGggUCGCGGa -3'
miRNA:   3'- -CCG--AGCG--UGCG-----CCGCaGCuuGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.