Results 1 - 20 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15954 | 3' | -59.4 | NC_004065.1 | + | 26043 | 1.11 | 0.002045 |
Target: 5'- cGGCUCGCACGCGGCGUCGAACCGCGAg -3' miRNA: 3'- -CCGAGCGUGCGCCGCAGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 125602 | 0.78 | 0.27073 |
Target: 5'- uGGC-CGUGCGCGGCGggUCGAugCGCGc -3' miRNA: 3'- -CCGaGCGUGCGCCGC--AGCUugGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 198555 | 0.76 | 0.365557 |
Target: 5'- aGGUcCGCGCGCGGCa-CGGACCGCu- -3' miRNA: 3'- -CCGaGCGUGCGCCGcaGCUUGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 217382 | 0.76 | 0.365557 |
Target: 5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3' miRNA: 3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 203976 | 0.76 | 0.358074 |
Target: 5'- cGGCUCGCgguucgACGCcGCGUgCGAGCCGCu- -3' miRNA: 3'- -CCGAGCG------UGCGcCGCA-GCUUGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 29009 | 0.75 | 0.420877 |
Target: 5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3' miRNA: 3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 83104 | 0.75 | 0.412667 |
Target: 5'- ---gCGCACGCGGCGgaaGAugCGCGGg -3' miRNA: 3'- ccgaGCGUGCGCCGCag-CUugGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 57952 | 0.75 | 0.39655 |
Target: 5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3' miRNA: 3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 30508 | 0.74 | 0.480955 |
Target: 5'- cGGCUgcgCGCACGUGGCGgcc-GCCGCGu -3' miRNA: 3'- -CCGA---GCGUGCGCCGCagcuUGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 99947 | 0.74 | 0.469472 |
Target: 5'- cGGCaUCGCcguagucgaccaccGcCGCGGCGugcUCGGGCCGCGGg -3' miRNA: 3'- -CCG-AGCG--------------U-GCGCCGC---AGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 89161 | 0.73 | 0.48988 |
Target: 5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3' miRNA: 3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 67598 | 0.73 | 0.48988 |
Target: 5'- cGGCUCGagauaGCGCGGCGUcCGucgcACCGUa- -3' miRNA: 3'- -CCGAGCg----UGCGCCGCA-GCu---UGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 127637 | 0.73 | 0.507046 |
Target: 5'- cGCUCGCGCugccgcuGCGGCGcCGAggGCgGCGGg -3' miRNA: 3'- cCGAGCGUG-------CGCCGCaGCU--UGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 32942 | 0.73 | 0.534649 |
Target: 5'- cGGCUCcCGCGCggaugcgGGCGUCGAcgucGCgGCGGa -3' miRNA: 3'- -CCGAGcGUGCG-------CCGCAGCU----UGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 54457 | 0.73 | 0.535579 |
Target: 5'- uGUUCGCGCGCGGUcu---GCCGCGAg -3' miRNA: 3'- cCGAGCGUGCGCCGcagcuUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 117414 | 0.72 | 0.573176 |
Target: 5'- gGGCUCGCgGCGCGGaGUgGcagccGAUCGCGAg -3' miRNA: 3'- -CCGAGCG-UGCGCCgCAgC-----UUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 223681 | 0.72 | 0.592216 |
Target: 5'- uGCUcacacCGCACGCGaGaaaaGUCaGAACCGCGAu -3' miRNA: 3'- cCGA-----GCGUGCGC-Cg---CAG-CUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 216886 | 0.72 | 0.592216 |
Target: 5'- cGUUCGCG-GCGGCG-CGAGgUGCGAg -3' miRNA: 3'- cCGAGCGUgCGCCGCaGCUUgGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 120876 | 0.72 | 0.58268 |
Target: 5'- cGGCUUGCccggggucaGgGCGGCGUCucGCgGCGAc -3' miRNA: 3'- -CCGAGCG---------UgCGCCGCAGcuUGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 60189 | 0.72 | 0.58268 |
Target: 5'- uGGCcCGCACgGCGGUGUaguaGAuaaacuCCGCGAu -3' miRNA: 3'- -CCGaGCGUG-CGCCGCAg---CUu-----GGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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