Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15954 | 3' | -59.4 | NC_004065.1 | + | 117414 | 0.72 | 0.573176 |
Target: 5'- gGGCUCGCgGCGCGGaGUgGcagccGAUCGCGAg -3' miRNA: 3'- -CCGAGCG-UGCGCCgCAgC-----UUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 74155 | 0.72 | 0.573176 |
Target: 5'- gGGCcgagaacccCGCAgGCGGCGuUCGAGCCGaUGAc -3' miRNA: 3'- -CCGa--------GCGUgCGCCGC-AGCUUGGC-GCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 63516 | 0.72 | 0.573176 |
Target: 5'- uGGcCUCGCccuCGCGGcCGUaGAucGCCGCGAg -3' miRNA: 3'- -CC-GAGCGu--GCGCC-GCAgCU--UGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 200969 | 0.72 | 0.563709 |
Target: 5'- cGGCUCcaggaucgGUGCGUGGUGaCGggUCGCGAc -3' miRNA: 3'- -CCGAG--------CGUGCGCCGCaGCuuGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 120115 | 0.72 | 0.58268 |
Target: 5'- cGGCg-GC-CGCGGCGgaCGAGCCGgGAc -3' miRNA: 3'- -CCGagCGuGCGCCGCa-GCUUGGCgCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 223681 | 0.72 | 0.592216 |
Target: 5'- uGCUcacacCGCACGCGaGaaaaGUCaGAACCGCGAu -3' miRNA: 3'- cCGA-----GCGUGCGC-Cg---CAG-CUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 120876 | 0.72 | 0.58268 |
Target: 5'- cGGCUUGCccggggucaGgGCGGCGUCucGCgGCGAc -3' miRNA: 3'- -CCGAGCG---------UgCGCCGCAGcuUGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 168315 | 0.71 | 0.648797 |
Target: 5'- uGGCUCGCAuccgccgcuacgcCGCGGaCGUgaCGcGCUGCGGa -3' miRNA: 3'- -CCGAGCGU-------------GCGCC-GCA--GCuUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 138538 | 0.71 | 0.601777 |
Target: 5'- cGCUCGaACGCGGCa-CGAGCgGCGGc -3' miRNA: 3'- cCGAGCgUGCGCCGcaGCUUGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 101845 | 0.71 | 0.629595 |
Target: 5'- uGCUCGCGgG-GGCGUCGGgggcgcuaucgccGCCGCa- -3' miRNA: 3'- cCGAGCGUgCgCCGCAGCU-------------UGGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 24832 | 0.71 | 0.630555 |
Target: 5'- uGGUggagaCGCACGCGGCGccCGAuguugGCgGCGAc -3' miRNA: 3'- -CCGa----GCGUGCGCCGCa-GCU-----UGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 138088 | 0.71 | 0.649756 |
Target: 5'- uGUUUGCAauuucaucauaGCGaCGUCGGACCGCGAc -3' miRNA: 3'- cCGAGCGUg----------CGCcGCAGCUUGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 164627 | 0.71 | 0.640159 |
Target: 5'- aGGCUCGCAgccuCGgaGGaacaGUCGggUCGCGGc -3' miRNA: 3'- -CCGAGCGU----GCg-CCg---CAGCuuGGCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 194357 | 0.71 | 0.649756 |
Target: 5'- uGGCUCGCgagcgACGUGGCGaUCGGcgGCCGg-- -3' miRNA: 3'- -CCGAGCG-----UGCGCCGC-AGCU--UGGCgcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 153245 | 0.71 | 0.620953 |
Target: 5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3' miRNA: 3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 198874 | 0.71 | 0.601777 |
Target: 5'- cGGC-CGCG-GCGGUGUCGAugCcCGAg -3' miRNA: 3'- -CCGaGCGUgCGCCGCAGCUugGcGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 153618 | 0.71 | 0.649756 |
Target: 5'- cGGCUCGg--GCGGCGccacUCGGACgGCGGc -3' miRNA: 3'- -CCGAGCgugCGCCGC----AGCUUGgCGCU- -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 624 | 0.71 | 0.629595 |
Target: 5'- aGGCUCGuCAgGCGGCGgaugUGGgugagugcguccgGCCGCGc -3' miRNA: 3'- -CCGAGC-GUgCGCCGCa---GCU-------------UGGCGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 187391 | 0.71 | 0.649756 |
Target: 5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3' miRNA: 3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5' |
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15954 | 3' | -59.4 | NC_004065.1 | + | 78874 | 0.71 | 0.605608 |
Target: 5'- aGCUCGCGgucgccgacgaucauCGCGGCGUUGccGCCGCc- -3' miRNA: 3'- cCGAGCGU---------------GCGCCGCAGCu-UGGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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