miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 26043 1.11 0.002045
Target:  5'- cGGCUCGCACGCGGCGUCGAACCGCGAg -3'
miRNA:   3'- -CCGAGCGUGCGCCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 125602 0.78 0.27073
Target:  5'- uGGC-CGUGCGCGGCGggUCGAugCGCGc -3'
miRNA:   3'- -CCGaGCGUGCGCCGC--AGCUugGCGCu -5'
15954 3' -59.4 NC_004065.1 + 203976 0.76 0.358074
Target:  5'- cGGCUCGCgguucgACGCcGCGUgCGAGCCGCu- -3'
miRNA:   3'- -CCGAGCG------UGCGcCGCA-GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 217382 0.76 0.365557
Target:  5'- cGGCUggUGCGguuCGCcGUGUCGAACCGCGAc -3'
miRNA:   3'- -CCGA--GCGU---GCGcCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 198555 0.76 0.365557
Target:  5'- aGGUcCGCGCGCGGCa-CGGACCGCu- -3'
miRNA:   3'- -CCGaGCGUGCGCCGcaGCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 57952 0.75 0.39655
Target:  5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3'
miRNA:   3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 83104 0.75 0.412667
Target:  5'- ---gCGCACGCGGCGgaaGAugCGCGGg -3'
miRNA:   3'- ccgaGCGUGCGCCGCag-CUugGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 29009 0.75 0.420877
Target:  5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3'
miRNA:   3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 99947 0.74 0.469472
Target:  5'- cGGCaUCGCcguagucgaccaccGcCGCGGCGugcUCGGGCCGCGGg -3'
miRNA:   3'- -CCG-AGCG--------------U-GCGCCGC---AGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30508 0.74 0.480955
Target:  5'- cGGCUgcgCGCACGUGGCGgcc-GCCGCGu -3'
miRNA:   3'- -CCGA---GCGUGCGCCGCagcuUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 67598 0.73 0.48988
Target:  5'- cGGCUCGagauaGCGCGGCGUcCGucgcACCGUa- -3'
miRNA:   3'- -CCGAGCg----UGCGCCGCA-GCu---UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 89161 0.73 0.48988
Target:  5'- uGGaCUCGCugGCGGCGgccuucaGGGCCGUc- -3'
miRNA:   3'- -CC-GAGCGugCGCCGCag-----CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 127637 0.73 0.507046
Target:  5'- cGCUCGCGCugccgcuGCGGCGcCGAggGCgGCGGg -3'
miRNA:   3'- cCGAGCGUG-------CGCCGCaGCU--UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 32942 0.73 0.534649
Target:  5'- cGGCUCcCGCGCggaugcgGGCGUCGAcgucGCgGCGGa -3'
miRNA:   3'- -CCGAGcGUGCG-------CCGCAGCU----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 54457 0.73 0.535579
Target:  5'- uGUUCGCGCGCGGUcu---GCCGCGAg -3'
miRNA:   3'- cCGAGCGUGCGCCGcagcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 22496 0.72 0.544905
Target:  5'- cGCggaGCGCGCGGCGaggaGGACCGaCGAc -3'
miRNA:   3'- cCGag-CGUGCGCCGCag--CUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 200969 0.72 0.563709
Target:  5'- cGGCUCcaggaucgGUGCGUGGUGaCGggUCGCGAc -3'
miRNA:   3'- -CCGAG--------CGUGCGCCGCaGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 117414 0.72 0.573176
Target:  5'- gGGCUCGCgGCGCGGaGUgGcagccGAUCGCGAg -3'
miRNA:   3'- -CCGAGCG-UGCGCCgCAgC-----UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 74155 0.72 0.573176
Target:  5'- gGGCcgagaacccCGCAgGCGGCGuUCGAGCCGaUGAc -3'
miRNA:   3'- -CCGa--------GCGUgCGCCGC-AGCUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 63516 0.72 0.573176
Target:  5'- uGGcCUCGCccuCGCGGcCGUaGAucGCCGCGAg -3'
miRNA:   3'- -CC-GAGCGu--GCGCC-GCAgCU--UGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.