miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 120115 0.72 0.58268
Target:  5'- cGGCg-GC-CGCGGCGgaCGAGCCGgGAc -3'
miRNA:   3'- -CCGagCGuGCGCCGCa-GCUUGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 60189 0.72 0.58268
Target:  5'- uGGCcCGCACgGCGGUGUaguaGAuaaacuCCGCGAu -3'
miRNA:   3'- -CCGaGCGUG-CGCCGCAg---CUu-----GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 120876 0.72 0.58268
Target:  5'- cGGCUUGCccggggucaGgGCGGCGUCucGCgGCGAc -3'
miRNA:   3'- -CCGAGCG---------UgCGCCGCAGcuUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 130168 0.72 0.592216
Target:  5'- -cCUCGCACgGCGGCGaUCGGGgCGCa- -3'
miRNA:   3'- ccGAGCGUG-CGCCGC-AGCUUgGCGcu -5'
15954 3' -59.4 NC_004065.1 + 223681 0.72 0.592216
Target:  5'- uGCUcacacCGCACGCGaGaaaaGUCaGAACCGCGAu -3'
miRNA:   3'- cCGA-----GCGUGCGC-Cg---CAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30453 0.72 0.592216
Target:  5'- uGC-CGaa-GCGGCGUCuGGACCGCGGc -3'
miRNA:   3'- cCGaGCgugCGCCGCAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 216886 0.72 0.592216
Target:  5'- cGUUCGCG-GCGGCG-CGAGgUGCGAg -3'
miRNA:   3'- cCGAGCGUgCGCCGCaGCUUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 138538 0.71 0.601777
Target:  5'- cGCUCGaACGCGGCa-CGAGCgGCGGc -3'
miRNA:   3'- cCGAGCgUGCGCCGcaGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 198874 0.71 0.601777
Target:  5'- cGGC-CGCG-GCGGUGUCGAugCcCGAg -3'
miRNA:   3'- -CCGaGCGUgCGCCGCAGCUugGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 78874 0.71 0.605608
Target:  5'- aGCUCGCGgucgccgacgaucauCGCGGCGUUGccGCCGCc- -3'
miRNA:   3'- cCGAGCGU---------------GCGCCGCAGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 153245 0.71 0.620953
Target:  5'- cGUUCGCcguCGCGGCGgCGAugCGCc- -3'
miRNA:   3'- cCGAGCGu--GCGCCGCaGCUugGCGcu -5'
15954 3' -59.4 NC_004065.1 + 101845 0.71 0.629595
Target:  5'- uGCUCGCGgG-GGCGUCGGgggcgcuaucgccGCCGCa- -3'
miRNA:   3'- cCGAGCGUgCgCCGCAGCU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 624 0.71 0.629595
Target:  5'- aGGCUCGuCAgGCGGCGgaugUGGgugagugcguccgGCCGCGc -3'
miRNA:   3'- -CCGAGC-GUgCGCCGCa---GCU-------------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 24832 0.71 0.630555
Target:  5'- uGGUggagaCGCACGCGGCGccCGAuguugGCgGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCGCCGCa-GCU-----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 164627 0.71 0.640159
Target:  5'- aGGCUCGCAgccuCGgaGGaacaGUCGggUCGCGGc -3'
miRNA:   3'- -CCGAGCGU----GCg-CCg---CAGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 168315 0.71 0.648797
Target:  5'- uGGCUCGCAuccgccgcuacgcCGCGGaCGUgaCGcGCUGCGGa -3'
miRNA:   3'- -CCGAGCGU-------------GCGCC-GCA--GCuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 194357 0.71 0.649756
Target:  5'- uGGCUCGCgagcgACGUGGCGaUCGGcgGCCGg-- -3'
miRNA:   3'- -CCGAGCG-----UGCGCCGC-AGCU--UGGCgcu -5'
15954 3' -59.4 NC_004065.1 + 153618 0.71 0.649756
Target:  5'- cGGCUCGg--GCGGCGccacUCGGACgGCGGc -3'
miRNA:   3'- -CCGAGCgugCGCCGC----AGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187391 0.71 0.649756
Target:  5'- aGCUgGCGCGCGGCG-CGGugUgGCGu -3'
miRNA:   3'- cCGAgCGUGCGCCGCaGCUugG-CGCu -5'
15954 3' -59.4 NC_004065.1 + 138088 0.71 0.649756
Target:  5'- uGUUUGCAauuucaucauaGCGaCGUCGGACCGCGAc -3'
miRNA:   3'- cCGAGCGUg----------CGCcGCAGCUUGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.