miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 106560 0.7 0.658384
Target:  5'- gGGCUCGCAgCGCGGgucgcugggcgaCGUgaucuacaacaccCGcAACCGCGAg -3'
miRNA:   3'- -CCGAGCGU-GCGCC------------GCA-------------GC-UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 166155 0.7 0.659342
Target:  5'- cGGCg-GCA-GCGGCGcCGAcgucgugcACCGCGAu -3'
miRNA:   3'- -CCGagCGUgCGCCGCaGCU--------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 37892 0.7 0.665084
Target:  5'- aGGC-CGuCugGCGGcCGUCGcuuguuucuuccuGCCGCGAu -3'
miRNA:   3'- -CCGaGC-GugCGCC-GCAGCu------------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 201019 0.7 0.668908
Target:  5'- aGGCcgcgUGCGCGCGGCGccUCGccACCGCc- -3'
miRNA:   3'- -CCGa---GCGUGCGCCGC--AGCu-UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 107513 0.7 0.668908
Target:  5'- cGCUCGCACGaggaGGUG-CGcGCgGCGAc -3'
miRNA:   3'- cCGAGCGUGCg---CCGCaGCuUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 207949 0.7 0.678448
Target:  5'- cGGa--GCGCGCGG-GUUGGgccGCCGCGAc -3'
miRNA:   3'- -CCgagCGUGCGCCgCAGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 103750 0.7 0.678448
Target:  5'- cGGUUCGCGCgGCGGgGccucCGGACCGUc- -3'
miRNA:   3'- -CCGAGCGUG-CGCCgCa---GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 164337 0.7 0.682255
Target:  5'- aGCUCGCACGcCcgcgcgauguccucgGGCGUCGGAucuucCUGCGGc -3'
miRNA:   3'- cCGAGCGUGC-G---------------CCGCAGCUU-----GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 126575 0.7 0.687005
Target:  5'- uGGCgcagcaGCACGCgcaggaaGGUGUCGAucagGCCGCGc -3'
miRNA:   3'- -CCGag----CGUGCG-------CCGCAGCU----UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 32819 0.7 0.687954
Target:  5'- uGCUCGCGuucCGCGacuucuaccGCcaccaGUCGAACCGCGGg -3'
miRNA:   3'- cCGAGCGU---GCGC---------CG-----CAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 201202 0.7 0.69742
Target:  5'- cGGCUCGggcgGCGCGGCGaCGugcgugcagagGACCcGCGAg -3'
miRNA:   3'- -CCGAGCg---UGCGCCGCaGC-----------UUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 62118 0.7 0.706837
Target:  5'- cGCUCGCGggagGCGGCaUCGucGCCGCGu -3'
miRNA:   3'- cCGAGCGUg---CGCCGcAGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 130583 0.7 0.706838
Target:  5'- gGGCgaggCGCGCgaugucgagGCGGCGUCu-GCCGCu- -3'
miRNA:   3'- -CCGa---GCGUG---------CGCCGCAGcuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 61322 0.69 0.716199
Target:  5'- -cCUCGCACucgaCGGCGa-GAGCCGCGGc -3'
miRNA:   3'- ccGAGCGUGc---GCCGCagCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 197192 0.69 0.716199
Target:  5'- cGGUUCGaCugGUGGCGguaGAAgUCGCGGa -3'
miRNA:   3'- -CCGAGC-GugCGCCGCag-CUU-GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 172572 0.69 0.716199
Target:  5'- cGCcaUCGcCACGaCGGCGUCGAAgaaGCGAa -3'
miRNA:   3'- cCG--AGC-GUGC-GCCGCAGCUUgg-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 6895 0.69 0.716199
Target:  5'- uGCUCGCccucaucuACGCGGCGgcuucAGCUGCGGg -3'
miRNA:   3'- cCGAGCG--------UGCGCCGCagc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 77948 0.69 0.724571
Target:  5'- uGGCUguagaugCGgACGCGGuCGUgGAgcGCCGUGAa -3'
miRNA:   3'- -CCGA-------GCgUGCGCC-GCAgCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 202570 0.69 0.725498
Target:  5'- aGCUCGCGCGUGauGCG-CGGAgaCGCGGu -3'
miRNA:   3'- cCGAGCGUGCGC--CGCaGCUUg-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 170703 0.69 0.725498
Target:  5'- cGC-CGCcCGCGGCG-CGAuuGCCGCu- -3'
miRNA:   3'- cCGaGCGuGCGCCGCaGCU--UGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.