miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 128424 0.69 0.729198
Target:  5'- cGGCggCGCcgccaccgagucugaGCGCGGCGgaggCGu-CCGCGGg -3'
miRNA:   3'- -CCGa-GCG---------------UGCGCCGCa---GCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 41404 0.69 0.734726
Target:  5'- uGCUCGC-CGcCGGCGacaCGGucGCCGUGAc -3'
miRNA:   3'- cCGAGCGuGC-GCCGCa--GCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 105163 0.69 0.734726
Target:  5'- gGGCaccUCGgACGUGGCG-CGGaugAUCGCGAu -3'
miRNA:   3'- -CCG---AGCgUGCGCCGCaGCU---UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 213169 0.69 0.734726
Target:  5'- uGGCUCGCccuCGcCGuGCGUgcgcaGAACUGCGGc -3'
miRNA:   3'- -CCGAGCGu--GC-GC-CGCAg----CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 64142 0.69 0.742964
Target:  5'- cGGCagCGCGUGCGGCcUCGccuucggGACCGUGAg -3'
miRNA:   3'- -CCGa-GCGUGCGCCGcAGC-------UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 195115 0.69 0.743875
Target:  5'- aGCUCGC-CgGCGGUGUC--GCCGCa- -3'
miRNA:   3'- cCGAGCGuG-CGCCGCAGcuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 146859 0.69 0.743875
Target:  5'- --gUCGCGCGCcGUGUCG-ACCGCa- -3'
miRNA:   3'- ccgAGCGUGCGcCGCAGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 78190 0.69 0.752938
Target:  5'- uGCUCGacgaACGCGuacccgucgcGCGUCGAG-CGCGAu -3'
miRNA:   3'- cCGAGCg---UGCGC----------CGCAGCUUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 143291 0.69 0.752938
Target:  5'- gGGC-CG-AgGCGGCGUCGGggGCCGgGGc -3'
miRNA:   3'- -CCGaGCgUgCGCCGCAGCU--UGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 91714 0.69 0.761908
Target:  5'- aGGcCUCGCACGCGauca-GGGCCGCGu -3'
miRNA:   3'- -CC-GAGCGUGCGCcgcagCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 1925 0.69 0.761908
Target:  5'- uGGUccaGUcUGCGGCGUCGucuccACCGCGGa -3'
miRNA:   3'- -CCGag-CGuGCGCCGCAGCu----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 82306 0.69 0.761908
Target:  5'- gGGCcCGUAgCGCGGCGUccagcucaucCGAGCCgGUGGu -3'
miRNA:   3'- -CCGaGCGU-GCGCCGCA----------GCUUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 90627 0.69 0.761908
Target:  5'- cGCU-GCGCGCGGgcCGUCGcgaccccaucaGACCGCGu -3'
miRNA:   3'- cCGAgCGUGCGCC--GCAGC-----------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 116723 0.69 0.761908
Target:  5'- cGGCgCGCGaGCGGCGUCGc-CCGUc- -3'
miRNA:   3'- -CCGaGCGUgCGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 87632 0.68 0.770776
Target:  5'- uGGCcCGCGCGa-GCG-CGAACUGCGc -3'
miRNA:   3'- -CCGaGCGUGCgcCGCaGCUUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 31746 0.68 0.770776
Target:  5'- uGCUgGaACGCGGUGUCGGA-CGCGu -3'
miRNA:   3'- cCGAgCgUGCGCCGCAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 99552 0.68 0.770776
Target:  5'- cGuCUCGC-CGCGGCGgacGGCCGUGGu -3'
miRNA:   3'- cC-GAGCGuGCGCCGCagcUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 229492 0.68 0.770776
Target:  5'- cGCUCGCACagGgGGCG-CGccACCGCGu -3'
miRNA:   3'- cCGAGCGUG--CgCCGCaGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 142498 0.68 0.770776
Target:  5'- cGuCUgGCACGCGcugcGCGUCGAcACCGUGu -3'
miRNA:   3'- cC-GAgCGUGCGC----CGCAGCU-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 191557 0.68 0.770776
Target:  5'- cGGCUcacucuucCGCACGCGuGCGgUGAucgGCgCGCGAa -3'
miRNA:   3'- -CCGA--------GCGUGCGC-CGCaGCU---UG-GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.