miRNA display CGI


Results 21 - 40 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 32322 0.66 0.873597
Target:  5'- cGGC-CGCGa-CGGCGUCGGA-CGuCGAg -3'
miRNA:   3'- -CCGaGCGUgcGCCGCAGCUUgGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 138323 0.66 0.873597
Target:  5'- aGCUCGCGgacauCGUGGCcgcgauGUCGcuCUGCGAc -3'
miRNA:   3'- cCGAGCGU-----GCGCCG------CAGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 229661 0.66 0.873597
Target:  5'- cGGCagUgGCAgGUgGGCGUCGGGgCGCGc -3'
miRNA:   3'- -CCG--AgCGUgCG-CCGCAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 127212 0.66 0.873597
Target:  5'- uGGUUCGgGaGCGGCG----GCCGCGAg -3'
miRNA:   3'- -CCGAGCgUgCGCCGCagcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 18148 0.66 0.873597
Target:  5'- cGGgaUGUugGCGGUaUCGu-CCGCGGg -3'
miRNA:   3'- -CCgaGCGugCGCCGcAGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 190299 0.66 0.873597
Target:  5'- cGGCgaucCGguCGCGGCGuUCGGagauACgGUGAg -3'
miRNA:   3'- -CCGa---GCguGCGCCGC-AGCU----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 171945 0.66 0.873597
Target:  5'- gGGuCUCGCGCaaGGCGggCGGugGCgGCGGc -3'
miRNA:   3'- -CC-GAGCGUGcgCCGCa-GCU--UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 86909 0.66 0.873597
Target:  5'- cGGuCUCGCccucggcgGCGCGcGCGUCGAaaacgaagACgGUGGa -3'
miRNA:   3'- -CC-GAGCG--------UGCGC-CGCAGCU--------UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 27069 0.66 0.873597
Target:  5'- aGGCUUggaGCACGUGuacucGUGUCGAgucaaggguAUCGCGAc -3'
miRNA:   3'- -CCGAG---CGUGCGC-----CGCAGCU---------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 114971 0.66 0.871541
Target:  5'- -cCUCGCGCGCGcCGUUGcccucggcccuggcGGCCGCGc -3'
miRNA:   3'- ccGAGCGUGCGCcGCAGC--------------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 66115 0.66 0.870852
Target:  5'- gGGCgacaucaccgaggCGCugGC-GCGcUGGGCCGCGGa -3'
miRNA:   3'- -CCGa------------GCGugCGcCGCaGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 108764 0.66 0.869468
Target:  5'- aGCaagaGCACgcuggaccagaggugGCGGCGUCGAACCugGCGu -3'
miRNA:   3'- cCGag--CGUG---------------CGCCGCAGCUUGG--CGCu -5'
15954 3' -59.4 NC_004065.1 + 109912 0.66 0.866678
Target:  5'- cGGCUCGUccgcCGCGGCcgccGUCGcgucCCGgGAg -3'
miRNA:   3'- -CCGAGCGu---GCGCCG----CAGCuu--GGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 104400 0.66 0.866678
Target:  5'- cGGCUCGUGCacuucuaccagGCGcGCaUCGAcccGCCGCGc -3'
miRNA:   3'- -CCGAGCGUG-----------CGC-CGcAGCU---UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 58426 0.66 0.865976
Target:  5'- aGGCgaugcggUUGCugGCGGUGaacUCGAGCuCGCu- -3'
miRNA:   3'- -CCG-------AGCGugCGCCGC---AGCUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 96416 0.67 0.859572
Target:  5'- cGCUCGCGaGCGGCGgc--ACgGCGGa -3'
miRNA:   3'- cCGAGCGUgCGCCGCagcuUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 166498 0.67 0.859572
Target:  5'- ---aCGCuCGCGGCGaUCuacGGCCGCGAg -3'
miRNA:   3'- ccgaGCGuGCGCCGC-AGc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 164546 0.67 0.859572
Target:  5'- aGCUCGCugugucgagccgGCgGCGGCGcCG-ACCGCu- -3'
miRNA:   3'- cCGAGCG------------UG-CGCCGCaGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 151525 0.67 0.859572
Target:  5'- aGGC-CGCugccggccGgGCGGUGUCGGGCgCGCu- -3'
miRNA:   3'- -CCGaGCG--------UgCGCCGCAGCUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 155226 0.67 0.859572
Target:  5'- cGCUCGUcagcaucuuGCGCGaGCG-Cu-GCCGCGAg -3'
miRNA:   3'- cCGAGCG---------UGCGC-CGCaGcuUGGCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.