miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 164546 0.67 0.859572
Target:  5'- aGCUCGCugugucgagccgGCgGCGGCGcCG-ACCGCu- -3'
miRNA:   3'- cCGAGCG------------UG-CGCCGCaGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 112632 0.67 0.859572
Target:  5'- aGCccagCGCGCGCGGCcgagcGUCGAuaugGCCGagGAa -3'
miRNA:   3'- cCGa---GCGUGCGCCG-----CAGCU----UGGCg-CU- -5'
15954 3' -59.4 NC_004065.1 + 35591 0.67 0.852286
Target:  5'- cGGUggCGUcgGCGGUGUCGGugCGgGAu -3'
miRNA:   3'- -CCGa-GCGugCGCCGCAGCUugGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 207509 0.67 0.852286
Target:  5'- cGCggCGCGauaGCGGuCGUCGGuccuccucGCCGCGc -3'
miRNA:   3'- cCGa-GCGUg--CGCC-GCAGCU--------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 38468 0.67 0.852286
Target:  5'- ---cCGCACGCGuGCGgaagagUGAGCCGCc- -3'
miRNA:   3'- ccgaGCGUGCGC-CGCa-----GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 196106 0.67 0.852286
Target:  5'- cGGCUCGCcacCGCcaacGGCGgguaCGGcauCCGCGGu -3'
miRNA:   3'- -CCGAGCGu--GCG----CCGCa---GCUu--GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 78672 0.67 0.852286
Target:  5'- cGGCcggCGC-CGCGGCGccCGAGa-GCGAg -3'
miRNA:   3'- -CCGa--GCGuGCGCCGCa-GCUUggCGCU- -5'
15954 3' -59.4 NC_004065.1 + 106447 0.67 0.852286
Target:  5'- cGCUCGUcgucgAUGCugGGCGUCGAcCCGUa- -3'
miRNA:   3'- cCGAGCG-----UGCG--CCGCAGCUuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 168165 0.67 0.852286
Target:  5'- aGGCccuucCGCGCGgGGCG-CGAcagcGgCGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCgCCGCaGCU----UgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 171805 0.67 0.852286
Target:  5'- -cUUCGUGCGCGGCGaCGugggcuuuGACCGCa- -3'
miRNA:   3'- ccGAGCGUGCGCCGCaGC--------UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 187029 0.67 0.851548
Target:  5'- uGGCg-GCgGCGCGGCGUCuGAggugaugcguagcACCGCu- -3'
miRNA:   3'- -CCGagCG-UGCGCCGCAG-CU-------------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 77040 0.67 0.850066
Target:  5'- aGCUgGCGCGgauCGGCGaCGAGaacacggccgagauCCGCGAg -3'
miRNA:   3'- cCGAgCGUGC---GCCGCaGCUU--------------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 42627 0.67 0.844824
Target:  5'- aGCUCGCACGUGuccgagagaCGgUGGACCGUGGa -3'
miRNA:   3'- cCGAGCGUGCGCc--------GCaGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 135052 0.67 0.844824
Target:  5'- aGGUcaggCGUACGCGGC----AGCCGCGGa -3'
miRNA:   3'- -CCGa---GCGUGCGCCGcagcUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 186393 0.67 0.844824
Target:  5'- aGGCUgCGUugGUGGUucguGUCugGAACCGCc- -3'
miRNA:   3'- -CCGA-GCGugCGCCG----CAG--CUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 152050 0.67 0.844824
Target:  5'- cGGCUCGC-CGCGGCcagCGucUCGgGGc -3'
miRNA:   3'- -CCGAGCGuGCGCCGca-GCuuGGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 151352 0.67 0.844824
Target:  5'- cGCUCucggGCGcCGCGGCGcCGGccGCUGCGc -3'
miRNA:   3'- cCGAG----CGU-GCGCCGCaGCU--UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 92522 0.67 0.844069
Target:  5'- cGGUgccUCGCGCGCgcguacgGGCGggCGGGCgCGCGc -3'
miRNA:   3'- -CCG---AGCGUGCG-------CCGCa-GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 194063 0.67 0.840265
Target:  5'- aGGCaggaGCA-GCGGCG-CGAguccgacgaccugcgGCCGCGAc -3'
miRNA:   3'- -CCGag--CGUgCGCCGCaGCU---------------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 187991 0.67 0.837192
Target:  5'- cGGC-CGCGCGCaacauGGCucgCGGAgguCCGCGAc -3'
miRNA:   3'- -CCGaGCGUGCG-----CCGca-GCUU---GGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.