miRNA display CGI


Results 61 - 80 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 199450 0.67 0.837192
Target:  5'- cGCUCGC-CGCGGCG--GAACgGgGGc -3'
miRNA:   3'- cCGAGCGuGCGCCGCagCUUGgCgCU- -5'
15954 3' -59.4 NC_004065.1 + 39201 0.67 0.837192
Target:  5'- -uCUCGCGCaCGGUGUCGcgUCGCa- -3'
miRNA:   3'- ccGAGCGUGcGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 187991 0.67 0.837192
Target:  5'- cGGC-CGCGCGCaacauGGCucgCGGAgguCCGCGAc -3'
miRNA:   3'- -CCGaGCGUGCG-----CCGca-GCUU---GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 101076 0.67 0.837192
Target:  5'- aGCUCGCGCcgGUcucgGGCGUuucucgccuuggCGAacGCCGCGAa -3'
miRNA:   3'- cCGAGCGUG--CG----CCGCA------------GCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 200868 0.67 0.837192
Target:  5'- gGGggCGCGgGCGGUGgCGAAUCGuCGGu -3'
miRNA:   3'- -CCgaGCGUgCGCCGCaGCUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 77842 0.67 0.837192
Target:  5'- aGGCUcCGgACGCGGCGUgGGcuCCcCGGu -3'
miRNA:   3'- -CCGA-GCgUGCGCCGCAgCUu-GGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 70042 0.67 0.83642
Target:  5'- cGCUCGuCACGguggagaCGGCcaCGAucGCCGCGAu -3'
miRNA:   3'- cCGAGC-GUGC-------GCCGcaGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 141394 0.67 0.832534
Target:  5'- gGGCUCgacguggaucccgaGCugGCGGCcaUCGccgagcucauggagGGCCGCGAc -3'
miRNA:   3'- -CCGAG--------------CGugCGCCGc-AGC--------------UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 45910 0.67 0.829396
Target:  5'- cGCUCGUuaACGUagauagGGuCGuaUCGAGCCGCGGu -3'
miRNA:   3'- cCGAGCG--UGCG------CC-GC--AGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 167885 0.67 0.829396
Target:  5'- aGCUgauccccuccUGUACGCGGCGaCGAugccgccucCCGCGAg -3'
miRNA:   3'- cCGA----------GCGUGCGCCGCaGCUu--------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 135652 0.67 0.829396
Target:  5'- aGCUCGC-CGCGGCcguaacgcgcGUCGGgggGCuCGCGc -3'
miRNA:   3'- cCGAGCGuGCGCCG----------CAGCU---UG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 132510 0.67 0.829396
Target:  5'- cGUUCGCGCGCauCGUCGGggugauccGCCGCa- -3'
miRNA:   3'- cCGAGCGUGCGccGCAGCU--------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 158073 0.67 0.829396
Target:  5'- cGGCUC-CACcgGCGGCGUCGccuCCGaccaGGc -3'
miRNA:   3'- -CCGAGcGUG--CGCCGCAGCuu-GGCg---CU- -5'
15954 3' -59.4 NC_004065.1 + 123666 0.67 0.829396
Target:  5'- -cCUCGCACGUGGCG-CGcugcCCGUGc -3'
miRNA:   3'- ccGAGCGUGCGCCGCaGCuu--GGCGCu -5'
15954 3' -59.4 NC_004065.1 + 151137 0.67 0.829396
Target:  5'- cGGCggcaaCGC-CGCGaugauCGUCGGcgACCGCGAg -3'
miRNA:   3'- -CCGa----GCGuGCGCc----GCAGCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 122819 0.67 0.829396
Target:  5'- cGCUCGCAUGCGcgaguagucgcGCGUCuuguccuugacGACCGCGu -3'
miRNA:   3'- cCGAGCGUGCGC-----------CGCAGc----------UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 150209 0.67 0.824642
Target:  5'- cGCUCGUAgcggauccgggccaGCGGCGUCGucaggaucAGCCGCu- -3'
miRNA:   3'- cCGAGCGUg-------------CGCCGCAGC--------UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 6471 0.67 0.821442
Target:  5'- gGGuCUCGCuCGCGuuGUCGcgAACCGCa- -3'
miRNA:   3'- -CC-GAGCGuGCGCcgCAGC--UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 79622 0.67 0.821442
Target:  5'- cGCUgCGCGCGCGGaCGcugCGGGCgUGCGu -3'
miRNA:   3'- cCGA-GCGUGCGCC-GCa--GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 152297 0.68 0.813336
Target:  5'- uGGCguugCGCAgGCGGaaCGUCGGgauCgGCGAc -3'
miRNA:   3'- -CCGa---GCGUgCGCC--GCAGCUu--GgCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.