miRNA display CGI


Results 81 - 100 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 109870 0.68 0.813336
Target:  5'- gGGCggUGcCAC-CGGCGUCGccgcGGCCGCGu -3'
miRNA:   3'- -CCGa-GC-GUGcGCCGCAGC----UUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 152297 0.68 0.813336
Target:  5'- uGGCguugCGCAgGCGGaaCGUCGGgauCgGCGAc -3'
miRNA:   3'- -CCGa---GCGUgCGCC--GCAGCUu--GgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 186908 0.68 0.813336
Target:  5'- cGGUcuUCGCgaGCGCggaucGGCGcCGggUCGCGGa -3'
miRNA:   3'- -CCG--AGCG--UGCG-----CCGCaGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 168694 0.68 0.813336
Target:  5'- cGGgUCGC-CGCGGC-UCucGCCGuCGAg -3'
miRNA:   3'- -CCgAGCGuGCGCCGcAGcuUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 113553 0.68 0.813336
Target:  5'- aGCUCGCcCGCcuuucuggGGauCGUCGAgaagGCCGCGGg -3'
miRNA:   3'- cCGAGCGuGCG--------CC--GCAGCU----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 141636 0.68 0.813336
Target:  5'- cGGCUCgGCGacggaggGCGGUGgCGGuGCCGCGGc -3'
miRNA:   3'- -CCGAG-CGUg------CGCCGCaGCU-UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 65689 0.68 0.813336
Target:  5'- aGGacaUCGCGCG-GGCGUgCGAGCUgGUGGa -3'
miRNA:   3'- -CCg--AGCGUGCgCCGCA-GCUUGG-CGCU- -5'
15954 3' -59.4 NC_004065.1 + 110834 0.68 0.813336
Target:  5'- aGGCaccaGUGCGgGGCG-CGGGCCGCc- -3'
miRNA:   3'- -CCGag--CGUGCgCCGCaGCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 68169 0.68 0.805086
Target:  5'- cGGCggCGCGCGCGacggaGCuGUCGGccccGCCGCu- -3'
miRNA:   3'- -CCGa-GCGUGCGC-----CG-CAGCU----UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 33795 0.68 0.805086
Target:  5'- cGGCcCGaCAUGCGGaCGUgGGACgaCGCGGa -3'
miRNA:   3'- -CCGaGC-GUGCGCC-GCAgCUUG--GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 200789 0.68 0.796697
Target:  5'- cGGCgguggCGgGCGaCGGCGUCucGgCGCGGg -3'
miRNA:   3'- -CCGa----GCgUGC-GCCGCAGcuUgGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 66725 0.68 0.788178
Target:  5'- aGGCUgGCGCcCGuGcCGUCGGACCccgGCGGc -3'
miRNA:   3'- -CCGAgCGUGcGC-C-GCAGCUUGG---CGCU- -5'
15954 3' -59.4 NC_004065.1 + 41052 0.68 0.788178
Target:  5'- aGCUCGggcCGCGCGGCGaCGAAgC-CGAa -3'
miRNA:   3'- cCGAGC---GUGCGCCGCaGCUUgGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 78346 0.68 0.788178
Target:  5'- gGGCgcCGCGCGCuGGCGguaGAGCuCGCu- -3'
miRNA:   3'- -CCGa-GCGUGCG-CCGCag-CUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 88699 0.68 0.788178
Target:  5'- cGCgUCGUAcaugacguucuCGCGGCG-CGAGCgGCGGa -3'
miRNA:   3'- cCG-AGCGU-----------GCGCCGCaGCUUGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 137938 0.68 0.783007
Target:  5'- gGGCUCGgagcugcuggcgcaaCGCGCGGCccucCGAGCgCGCGu -3'
miRNA:   3'- -CCGAGC---------------GUGCGCCGca--GCUUG-GCGCu -5'
15954 3' -59.4 NC_004065.1 + 126231 0.68 0.779535
Target:  5'- aGGCggGCGucuucacgcccgUGCGGCGgaUCGAGCCGCc- -3'
miRNA:   3'- -CCGagCGU------------GCGCCGC--AGCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 129738 0.68 0.779535
Target:  5'- cGGCUCGUGCGaGGUGggCGAgcagcuguACCGCa- -3'
miRNA:   3'- -CCGAGCGUGCgCCGCa-GCU--------UGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 132329 0.68 0.779535
Target:  5'- aGCcCGgGCgGCGGCGgcagCGA-CCGCGAg -3'
miRNA:   3'- cCGaGCgUG-CGCCGCa---GCUuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 184486 0.68 0.779535
Target:  5'- cGGCUgccgccgcCGC-CGCGGCGcCGggUgGCGu -3'
miRNA:   3'- -CCGA--------GCGuGCGCCGCaGCuuGgCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.