miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 128 0.66 0.879662
Target:  5'- uGGCUgcgCGCACGUcaccgagGGCGUgGcACCGUGc -3'
miRNA:   3'- -CCGA---GCGUGCG-------CCGCAgCuUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 489 0.66 0.886861
Target:  5'- gGGC-CGCGCGCcGCGU----CCGCGGg -3'
miRNA:   3'- -CCGaGCGUGCGcCGCAgcuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 624 0.71 0.629595
Target:  5'- aGGCUCGuCAgGCGGCGgaugUGGgugagugcguccgGCCGCGc -3'
miRNA:   3'- -CCGAGC-GUgCGCCGCa---GCU-------------UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 1925 0.69 0.761908
Target:  5'- uGGUccaGUcUGCGGCGUCGucuccACCGCGGa -3'
miRNA:   3'- -CCGag-CGuGCGCCGCAGCu----UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 6471 0.67 0.821442
Target:  5'- gGGuCUCGCuCGCGuuGUCGcgAACCGCa- -3'
miRNA:   3'- -CC-GAGCGuGCGCcgCAGC--UUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 6895 0.69 0.716199
Target:  5'- uGCUCGCccucaucuACGCGGCGgcuucAGCUGCGGg -3'
miRNA:   3'- cCGAGCG--------UGCGCCGCagc--UUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 18148 0.66 0.873597
Target:  5'- cGGgaUGUugGCGGUaUCGu-CCGCGGg -3'
miRNA:   3'- -CCgaGCGugCGCCGcAGCuuGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 22496 0.72 0.544905
Target:  5'- cGCggaGCGCGCGGCGaggaGGACCGaCGAc -3'
miRNA:   3'- cCGag-CGUGCGCCGCag--CUUGGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 24832 0.71 0.630555
Target:  5'- uGGUggagaCGCACGCGGCGccCGAuguugGCgGCGAc -3'
miRNA:   3'- -CCGa----GCGUGCGCCGCa-GCU-----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 26043 1.11 0.002045
Target:  5'- cGGCUCGCACGCGGCGUCGAACCGCGAg -3'
miRNA:   3'- -CCGAGCGUGCGCCGCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 27069 0.66 0.873597
Target:  5'- aGGCUUggaGCACGUGuacucGUGUCGAgucaaggguAUCGCGAc -3'
miRNA:   3'- -CCGAG---CGUGCGC-----CGCAGCU---------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 29009 0.75 0.420877
Target:  5'- aGGCgccgcgCGCACGCGGCcUCGAGucagaccggcgUCGCGAc -3'
miRNA:   3'- -CCGa-----GCGUGCGCCGcAGCUU-----------GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30453 0.72 0.592216
Target:  5'- uGC-CGaa-GCGGCGUCuGGACCGCGGc -3'
miRNA:   3'- cCGaGCgugCGCCGCAG-CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 30508 0.74 0.480955
Target:  5'- cGGCUgcgCGCACGUGGCGgcc-GCCGCGu -3'
miRNA:   3'- -CCGA---GCGUGCGCCGCagcuUGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 31168 0.66 0.893198
Target:  5'- aGGaCUgGUACGUGGUGUgCGGAUCGgGc -3'
miRNA:   3'- -CC-GAgCGUGCGCCGCA-GCUUGGCgCu -5'
15954 3' -59.4 NC_004065.1 + 31746 0.68 0.770776
Target:  5'- uGCUgGaACGCGGUGUCGGA-CGCGu -3'
miRNA:   3'- cCGAgCgUGCGCCGCAGCUUgGCGCu -5'
15954 3' -59.4 NC_004065.1 + 32322 0.66 0.873597
Target:  5'- cGGC-CGCGa-CGGCGUCGGA-CGuCGAg -3'
miRNA:   3'- -CCGaGCGUgcGCCGCAGCUUgGC-GCU- -5'
15954 3' -59.4 NC_004065.1 + 32819 0.7 0.687954
Target:  5'- uGCUCGCGuucCGCGacuucuaccGCcaccaGUCGAACCGCGGg -3'
miRNA:   3'- cCGAGCGU---GCGC---------CG-----CAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 32942 0.73 0.534649
Target:  5'- cGGCUCcCGCGCggaugcgGGCGUCGAcgucGCgGCGGa -3'
miRNA:   3'- -CCGAGcGUGCG-------CCGCAGCU----UGgCGCU- -5'
15954 3' -59.4 NC_004065.1 + 33795 0.68 0.805086
Target:  5'- cGGCcCGaCAUGCGGaCGUgGGACgaCGCGGa -3'
miRNA:   3'- -CCGaGC-GUGCGCC-GCAgCUUG--GCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.