miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15954 3' -59.4 NC_004065.1 + 35591 0.67 0.852286
Target:  5'- cGGUggCGUcgGCGGUGUCGGugCGgGAu -3'
miRNA:   3'- -CCGa-GCGugCGCCGCAGCUugGCgCU- -5'
15954 3' -59.4 NC_004065.1 + 37892 0.7 0.665084
Target:  5'- aGGC-CGuCugGCGGcCGUCGcuuguuucuuccuGCCGCGAu -3'
miRNA:   3'- -CCGaGC-GugCGCC-GCAGCu------------UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 38468 0.67 0.852286
Target:  5'- ---cCGCACGCGuGCGgaagagUGAGCCGCc- -3'
miRNA:   3'- ccgaGCGUGCGC-CGCa-----GCUUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 39201 0.67 0.837192
Target:  5'- -uCUCGCGCaCGGUGUCGcgUCGCa- -3'
miRNA:   3'- ccGAGCGUGcGCCGCAGCuuGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 41052 0.68 0.788178
Target:  5'- aGCUCGggcCGCGCGGCGaCGAAgC-CGAa -3'
miRNA:   3'- cCGAGC---GUGCGCCGCaGCUUgGcGCU- -5'
15954 3' -59.4 NC_004065.1 + 41117 0.66 0.886861
Target:  5'- cGGCaggUGUcCG-GGuCGUCGGGCCGUGAg -3'
miRNA:   3'- -CCGa--GCGuGCgCC-GCAGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 41404 0.69 0.734726
Target:  5'- uGCUCGC-CGcCGGCGacaCGGucGCCGUGAc -3'
miRNA:   3'- cCGAGCGuGC-GCCGCa--GCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 41484 0.66 0.880327
Target:  5'- aGCgugCGC-CGgGGCGUCGGgacggggaGCgCGCGGg -3'
miRNA:   3'- cCGa--GCGuGCgCCGCAGCU--------UG-GCGCU- -5'
15954 3' -59.4 NC_004065.1 + 42627 0.67 0.844824
Target:  5'- aGCUCGCACGUGuccgagagaCGgUGGACCGUGGa -3'
miRNA:   3'- cCGAGCGUGCGCc--------GCaGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 45910 0.67 0.829396
Target:  5'- cGCUCGUuaACGUagauagGGuCGuaUCGAGCCGCGGu -3'
miRNA:   3'- cCGAGCG--UGCG------CC-GC--AGCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 54457 0.73 0.535579
Target:  5'- uGUUCGCGCGCGGUcu---GCCGCGAg -3'
miRNA:   3'- cCGAGCGUGCGCCGcagcuUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 57952 0.75 0.39655
Target:  5'- cGCUCGaacCGCGGCGgccacggaGGACCGCGAc -3'
miRNA:   3'- cCGAGCgu-GCGCCGCag------CUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 58426 0.66 0.865976
Target:  5'- aGGCgaugcggUUGCugGCGGUGaacUCGAGCuCGCu- -3'
miRNA:   3'- -CCG-------AGCGugCGCCGC---AGCUUG-GCGcu -5'
15954 3' -59.4 NC_004065.1 + 58603 0.66 0.895677
Target:  5'- cGGCggagucgagaucgaCGCGCGCGGCGgagucgcCGGucUCGCGGa -3'
miRNA:   3'- -CCGa-------------GCGUGCGCCGCa------GCUu-GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 60189 0.72 0.58268
Target:  5'- uGGCcCGCACgGCGGUGUaguaGAuaaacuCCGCGAu -3'
miRNA:   3'- -CCGaGCGUG-CGCCGCAg---CUu-----GGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 61322 0.69 0.716199
Target:  5'- -cCUCGCACucgaCGGCGa-GAGCCGCGGc -3'
miRNA:   3'- ccGAGCGUGc---GCCGCagCUUGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 61832 0.68 0.813336
Target:  5'- cGGCgUCGUcaaACaaGGCGUCGcGCCGCu- -3'
miRNA:   3'- -CCG-AGCG---UGcgCCGCAGCuUGGCGcu -5'
15954 3' -59.4 NC_004065.1 + 62118 0.7 0.706837
Target:  5'- cGCUCGCGggagGCGGCaUCGucGCCGCGu -3'
miRNA:   3'- cCGAGCGUg---CGCCGcAGCu-UGGCGCu -5'
15954 3' -59.4 NC_004065.1 + 63516 0.72 0.573176
Target:  5'- uGGcCUCGCccuCGCGGcCGUaGAucGCCGCGAg -3'
miRNA:   3'- -CC-GAGCGu--GCGCC-GCAgCU--UGGCGCU- -5'
15954 3' -59.4 NC_004065.1 + 64142 0.69 0.742964
Target:  5'- cGGCagCGCGUGCGGCcUCGccuucggGACCGUGAg -3'
miRNA:   3'- -CCGa-GCGUGCGCCGcAGC-------UUGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.